Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 4.3e-116 421.4 223 100.0
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 7.0e-90 334.3 224 76.8
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 5.4e-26 122.1 141 47.5
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 4.6e-25 119.0 127 50.4
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 3.1e-21 106.3 131 39.7
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.0e-20 103.6 135 40.0
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 2.6e-20 103.2 129 41.1
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 2.6e-20 103.2 129 41.1
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 3.4e-20 102.8 133 40.6
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 3.4e-20 102.8 131 38.2
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 4.5e-20 102.4 131 40.5
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 4.5e-20 102.4 137 38.0
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 4.5e-20 102.4 133 42.9
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 5.8e-20 102.1 97 43.3
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 5.8e-20 102.1 129 40.3
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 5.8e-20 102.1 103 45.6
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 9.9e-20 101.3 131 40.5
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 9.9e-20 101.3 97 45.4
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.3e-19 100.9 132 39.4
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.7e-19 100.5 97 45.4
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.7e-19 100.5 131 40.5
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.2e-19 100.1 126 39.7
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 2.2e-19 100.1 84 52.4
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 2.2e-19 100.1 133 39.8
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 3.8e-19 99.4 106 40.6
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 3.8e-19 99.4 89 48.3
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 4.9e-19 99.0 132 40.2
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 4.9e-19 99.0 97 45.4
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.9e-19 99.0 98 42.9
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 6.4e-19 98.6 97 45.4
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 8.4e-19 98.2 134 38.1
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 8.4e-19 98.2 136 36.8
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 8.4e-19 98.2 143 39.2
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 8.4e-19 98.2 143 39.2
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 8.4e-19 98.2 98 42.9
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.1e-18 97.8 128 39.1
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.1e-18 97.8 112 42.9
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.1e-18 97.8 144 37.5
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.1e-18 97.8 134 38.1
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.4e-18 97.4 84 47.6
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.9e-18 97.1 84 50.0
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 1.9e-18 97.1 90 45.6
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.9e-18 97.1 132 40.2
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.9e-18 97.1 86 47.7
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.9e-18 97.1 86 47.7
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.4e-18 96.7 104 42.3
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.4e-18 96.7 130 39.2
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.4e-18 96.7 98 41.8
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.4e-18 96.7 98 41.8
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 2.4e-18 96.7 93 46.2
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.4e-18 96.7 134 42.5
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 3.2e-18 96.3 162 33.3
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 3.2e-18 96.3 133 38.3
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.2e-18 96.3 84 47.6
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.2e-18 96.3 84 47.6
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.2e-18 96.3 129 36.4
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 4.2e-18 95.9 134 40.3
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.2e-18 95.9 118 44.1
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.2e-18 95.9 98 42.9
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.2e-18 95.9 100 42.0
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.2e-18 95.9 100 42.0
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 4.2e-18 95.9 120 45.0
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 5.5e-18 95.5 133 38.3
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 5.5e-18 95.5 86 46.5
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 5.5e-18 95.5 95 44.2
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 5.5e-18 95.5 88 45.5
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 5.5e-18 95.5 84 46.4
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 5.5e-18 95.5 93 44.1
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 7.1e-18 95.1 92 45.7
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 7.1e-18 95.1 134 38.1
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 7.1e-18 95.1 88 48.9
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.1e-18 95.1 98 41.8
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 7.1e-18 95.1 98 40.8
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 7.1e-18 95.1 84 47.6
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 7.1e-18 95.1 142 34.5
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 9.3e-18 94.7 97 45.4
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 9.3e-18 94.7 89 47.2
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 9.3e-18 94.7 128 39.8
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 9.3e-18 94.7 131 36.6
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 9.3e-18 94.7 129 40.3
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.6e-17 94.0 146 37.7
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 1.6e-17 94.0 84 46.4
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.6e-17 94.0 88 45.5
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.6e-17 94.0 103 40.8
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.1e-17 93.6 140 36.4
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.1e-17 93.6 148 35.8
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 2.1e-17 93.6 143 36.4
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 2.7e-17 93.2 133 37.6
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 2.7e-17 93.2 164 34.1
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 2.7e-17 93.2 123 39.0
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 2.7e-17 93.2 131 35.9
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 3.5e-17 92.8 146 37.0
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 4.6e-17 92.4 135 37.8
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.6e-17 92.4 104 43.3
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.6e-17 92.4 84 44.0
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.6e-17 92.4 83 45.8
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 6.0e-17 92.0 84 44.0
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 7.9e-17 91.7 149 36.2
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 7.9e-17 91.7 85 47.1
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.0e-16 91.3 86 47.7
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.0e-16 91.3 127 40.2
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.3e-16 90.9 164 34.1
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.3e-16 90.9 164 34.1
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.3e-16 90.9 119 39.5
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.3e-16 90.9 87 48.3
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.8e-16 90.5 106 42.5
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 2.3e-16 90.1 136 35.3
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 2.3e-16 90.1 106 39.6
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.3e-16 90.1 136 35.3
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 3.0e-16 89.7 136 35.3
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 3.0e-16 89.7 136 35.3
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 3.0e-16 89.7 103 41.7
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 3.0e-16 89.7 86 43.0
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 3.9e-16 89.4 106 42.5
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 5.1e-16 89.0 116 36.2
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 5.1e-16 89.0 116 36.2
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 5.1e-16 89.0 116 36.2
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 5.1e-16 89.0 120 36.7
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 8.7e-16 88.2 106 38.7
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 8.7e-16 88.2 96 42.7
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 8.7e-16 88.2 124 38.7
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 8.7e-16 88.2 128 38.3
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.1e-15 87.8 92 40.2
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.1e-15 87.8 134 32.1
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.5e-15 87.4 86 41.9
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.9e-15 87.0 86 43.0
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.9e-15 87.0 86 44.2
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.3e-15 86.3 95 41.1
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 7.4e-15 85.1 136 35.3
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 9.6e-15 84.7 124 37.1
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 9.6e-15 84.7 84 47.6
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.3e-14 84.3 111 41.4
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.3e-14 84.3 101 41.6
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 2.8e-14 83.2 84 45.2
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.8e-13 80.5 93 47.3
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 9.0e-13 78.2 90 42.2
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 4.5e-12 75.9 115 35.7
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 7.6e-12 75.1 81 39.5
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 1.0e-11 74.7 84 39.3
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.3e-11 74.3 122 37.7
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 3.8e-11 72.8 61 47.5
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.5e-10 70.1 94 38.3
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 3.2e-10 69.7 83 38.6
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 6.7e-08 62.0 38 57.9
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 3.3e-07 59.7 35 62.9
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 2.8e-06 56.6 43 48.8
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 4.8e-06 55.8 32 59.4


User provided reference genes

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