Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.7e-70 269.2 141 100.0
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.3e-65 253.1 139 93.5
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.0e-38 163.7 136 60.3
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 5.1e-38 161.4 136 58.8
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 8.7e-38 160.6 136 60.3
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 3.3e-37 158.7 136 58.8
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 3.3e-37 158.7 136 58.8
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 7.4e-37 157.5 131 60.3
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 7.4e-37 157.5 136 58.8
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 7.4e-37 157.5 136 58.8
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 7.4e-37 157.5 136 58.8
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 9.6e-37 157.1 132 60.6
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 9.6e-37 157.1 139 58.3
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.3e-36 156.8 132 59.1
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.3e-36 156.8 136 59.6
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.6e-36 156.4 137 59.1
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 2.1e-36 156.0 132 59.1
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 2.8e-36 155.6 136 59.6
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 2.8e-36 155.6 137 57.7
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 3.7e-36 155.2 136 57.4
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.7e-36 155.2 137 58.4
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 4.8e-36 154.8 130 60.0
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 4.8e-36 154.8 136 59.6
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 4.8e-36 154.8 136 57.4
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.8e-36 154.8 136 58.1
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 6.3e-36 154.5 139 58.3
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 6.3e-36 154.5 137 57.7
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 6.3e-36 154.5 136 58.1
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 8.2e-36 154.1 136 58.1
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 8.2e-36 154.1 137 59.1
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 8.2e-36 154.1 137 59.1
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 8.2e-36 154.1 139 57.6
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.1e-35 153.7 137 56.9
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 1.1e-35 153.7 136 56.6
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 1.1e-35 153.7 136 58.1
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 1.1e-35 153.7 143 58.0
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 1.1e-35 153.7 143 58.0
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 1.1e-35 153.7 136 57.4
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 1.1e-35 153.7 137 56.9
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 1.4e-35 153.3 139 57.6
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.4e-35 153.3 136 57.4
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 1.4e-35 153.3 137 57.7
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 1.4e-35 153.3 136 58.8
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 1.4e-35 153.3 138 58.0
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.8e-35 152.9 139 58.3
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 1.8e-35 152.9 136 57.4
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.4e-35 152.5 139 58.3
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 2.4e-35 152.5 139 54.7
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 2.4e-35 152.5 139 56.1
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.4e-35 152.5 137 57.7
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 2.4e-35 152.5 138 57.2
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 3.1e-35 152.1 137 56.2
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 3.1e-35 152.1 137 56.2
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 3.1e-35 152.1 137 56.2
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 3.1e-35 152.1 137 55.5
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 3.1e-35 152.1 136 57.4
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 3.1e-35 152.1 139 56.8
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 4.1e-35 151.8 137 56.2
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 4.1e-35 151.8 137 56.2
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 4.1e-35 151.8 137 56.2
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 4.1e-35 151.8 136 56.6
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 5.3e-35 151.4 136 54.4
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 5.3e-35 151.4 137 56.2
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 5.3e-35 151.4 137 56.2
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 5.3e-35 151.4 139 57.6
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 6.9e-35 151.0 138 58.0
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 6.9e-35 151.0 139 56.1
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 6.9e-35 151.0 136 56.6
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 6.9e-35 151.0 139 56.1
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 6.9e-35 151.0 142 57.0
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 6.9e-35 151.0 139 56.8
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 6.9e-35 151.0 137 56.9
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 6.9e-35 151.0 137 56.9
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 6.9e-35 151.0 137 56.9
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 9.0e-35 150.6 138 58.0
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 9.0e-35 150.6 137 56.2
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 9.0e-35 150.6 137 55.5
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 9.0e-35 150.6 138 58.0
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 9.0e-35 150.6 138 58.0
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 9.0e-35 150.6 137 56.2
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 9.0e-35 150.6 136 57.4
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 9.0e-35 150.6 138 56.5
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 1.2e-34 150.2 137 55.5
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 1.2e-34 150.2 136 58.1
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 1.2e-34 150.2 136 58.1
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 1.2e-34 150.2 138 58.0
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 1.2e-34 150.2 138 58.0
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 1.2e-34 150.2 138 58.0
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 1.2e-34 150.2 137 56.9
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 1.2e-34 150.2 137 56.2
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.2e-34 150.2 137 56.9
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 1.5e-34 149.8 139 57.6
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 1.5e-34 149.8 136 58.1
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 1.5e-34 149.8 139 57.6
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 1.5e-34 149.8 131 57.3
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 1.5e-34 149.8 136 55.9
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 1.5e-34 149.8 137 55.5
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 2.0e-34 149.4 140 57.1
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 2.0e-34 149.4 137 56.2
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 2.0e-34 149.4 136 55.9
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 2.0e-34 149.4 136 57.4
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 2.6e-34 149.1 137 55.5
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 2.6e-34 149.1 138 57.2
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 2.6e-34 149.1 136 55.1
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 2.6e-34 149.1 136 56.6
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 2.6e-34 149.1 140 57.1
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 3.4e-34 148.7 140 57.1
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 3.4e-34 148.7 139 55.4
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 3.4e-34 148.7 137 56.2
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 4.5e-34 148.3 131 55.7
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 5.9e-34 147.9 136 55.9
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 7.6e-34 147.5 137 55.5
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 7.6e-34 147.5 137 54.7
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 7.6e-34 147.5 140 54.3
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 7.6e-34 147.5 136 55.9
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 1.0e-33 147.1 136 55.9
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 1.0e-33 147.1 136 54.4
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 1.0e-33 147.1 140 55.7
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 1.3e-33 146.7 136 54.4
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 1.7e-33 146.4 136 56.6
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 1.7e-33 146.4 137 57.7
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 2.2e-33 146.0 136 54.4
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 2.2e-33 146.0 137 54.0
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 2.2e-33 146.0 140 54.3
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 2.2e-33 146.0 137 56.9
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 2.9e-33 145.6 137 54.0
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 6.5e-33 144.4 136 54.4
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 8.5e-33 144.1 127 57.5
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 8.5e-33 144.1 136 55.1
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 8.5e-33 144.1 143 55.9
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 1.1e-32 143.7 139 54.0
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 1.1e-32 143.7 143 55.2
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.4e-32 143.3 131 53.4
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.9e-32 142.9 137 52.6
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 1.9e-32 142.9 136 55.1
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 1.9e-32 142.9 129 55.8
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 2.5e-32 142.5 139 54.0
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 4.2e-32 141.7 136 54.4
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 5.5e-32 141.4 142 54.9
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 7.2e-32 141.0 140 56.4
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 7.2e-32 141.0 137 56.2
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 9.3e-32 140.6 139 54.7
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 9.3e-32 140.6 136 56.6
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 1.2e-31 140.2 139 54.7
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 1.2e-31 140.2 143 54.5
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 1.6e-31 139.8 142 54.2
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 1.6e-31 139.8 142 54.2
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 1.6e-31 139.8 102 62.7
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 7.9e-31 137.5 136 52.9
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 7.9e-31 137.5 130 53.1
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.8e-30 136.3 137 53.3
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 1.8e-30 136.3 129 54.3
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 3.9e-30 135.2 103 60.2
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 6.7e-30 134.4 110 56.4
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 1.9e-29 132.9 116 56.0
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 9.7e-29 130.6 132 54.5
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 1.6e-28 129.8 137 52.6
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 2.2e-28 129.4 140 55.0
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 1.3e-25 120.2 129 53.5
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 3.2e-24 115.5 140 50.0
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 1.6e-15 86.7 91 52.7
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 3.6e-15 85.5 137 42.3
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 3.6e-15 85.5 124 38.7
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 6.1e-15 84.7 58 67.2
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 1.4e-14 83.6 138 41.3
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 7.4e-13 77.8 144 40.3
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.3e-12 77.0 79 51.9
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 3.7e-12 75.5 78 53.8
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 1.8e-11 73.2 81 50.6
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 2.4e-11 72.8 81 46.9
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 2.0e-10 69.7 97 41.2
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 1.6e-07 60.1 62 48.4
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 1.6e-07 60.1 63 52.4
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 2.1e-07 59.7 124 34.7


User provided reference genes

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