Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 2.4e-105 385.6 199 100.0
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 8.1e-82 307.4 199 82.9
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 5.0e-39 165.2 178 56.2
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 6.5e-39 164.9 146 62.3
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.9e-38 163.3 139 62.6
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.9e-38 163.3 139 62.6
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 1.9e-38 163.3 147 61.2
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 2.5e-38 162.9 139 61.9
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 3.2e-38 162.5 139 62.6
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 3.2e-38 162.5 166 55.4
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 3.2e-38 162.5 200 50.0
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 4.2e-38 162.2 154 57.8
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 4.2e-38 162.2 137 63.5
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 5.5e-38 161.8 155 58.7
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 7.2e-38 161.4 137 64.2
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 7.2e-38 161.4 137 63.5
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 7.2e-38 161.4 137 62.8
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 9.4e-38 161.0 137 62.0
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 9.4e-38 161.0 137 62.8
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 9.4e-38 161.0 137 62.8
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 9.4e-38 161.0 166 54.8
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.2e-37 160.6 137 62.8
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 1.6e-37 160.2 137 62.8
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 1.6e-37 160.2 149 59.7
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 1.6e-37 160.2 146 60.3
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 1.6e-37 160.2 136 64.0
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 1.6e-37 160.2 160 56.9
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 2.1e-37 159.8 136 63.2
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 2.7e-37 159.5 146 61.0
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 3.6e-37 159.1 137 62.0
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 4.7e-37 158.7 136 63.2
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 6.1e-37 158.3 136 61.8
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 6.1e-37 158.3 136 61.8
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 6.1e-37 158.3 136 62.5
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 6.1e-37 158.3 162 56.8
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 1.0e-36 157.5 137 61.3
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 1.0e-36 157.5 137 62.0
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 1.0e-36 157.5 163 55.2
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 1.0e-36 157.5 134 62.7
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 1.4e-36 157.1 169 53.3
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 1.8e-36 156.8 137 61.3
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 1.8e-36 156.8 137 61.3
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.8e-36 156.8 137 61.3
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 1.8e-36 156.8 163 55.8
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 2.3e-36 156.4 145 59.3
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 2.3e-36 156.4 145 60.0
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 2.3e-36 156.4 134 62.7
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 3.0e-36 156.0 137 59.9
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 3.0e-36 156.0 137 63.5
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 4.0e-36 155.6 160 56.2
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.0e-36 155.6 139 60.4
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.0e-36 155.6 139 59.7
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 4.0e-36 155.6 139 59.7
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 4.0e-36 155.6 186 50.0
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 4.0e-36 155.6 137 61.3
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 5.2e-36 155.2 136 62.5
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 5.2e-36 155.2 136 62.5
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 6.8e-36 154.8 133 62.4
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 6.8e-36 154.8 146 59.6
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 6.8e-36 154.8 151 57.6
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 6.8e-36 154.8 137 60.6
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 8.8e-36 154.5 174 53.4
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 8.8e-36 154.5 134 60.4
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 8.8e-36 154.5 145 59.3
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 1.2e-35 154.1 137 62.0
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 1.2e-35 154.1 145 58.6
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 1.2e-35 154.1 137 62.0
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 1.2e-35 154.1 145 58.6
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 1.5e-35 153.7 145 58.6
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 1.5e-35 153.7 145 58.6
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 1.5e-35 153.7 145 58.6
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.5e-35 153.7 139 59.0
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 1.5e-35 153.7 137 61.3
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 2.0e-35 153.3 149 57.7
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 2.0e-35 153.3 134 61.2
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 2.0e-35 153.3 137 59.1
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 2.6e-35 152.9 145 56.6
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 3.4e-35 152.5 137 60.6
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 3.4e-35 152.5 136 56.6
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 4.4e-35 152.1 135 61.5
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 9.8e-35 151.0 142 57.0
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 1.3e-34 150.6 137 59.9
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 1.3e-34 150.6 143 57.3
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 1.3e-34 150.6 135 60.7
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 1.3e-34 150.6 154 53.9
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 1.3e-34 150.6 155 54.8
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 2.8e-34 149.4 137 60.6
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 3.7e-34 149.1 137 57.7
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 1.4e-33 147.1 136 60.3
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 5.4e-33 145.2 145 57.2
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 9.1e-33 144.4 134 57.5
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 2.0e-32 143.3 139 54.7
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 4.5e-32 142.1 168 51.8
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 4.5e-32 142.1 169 51.5
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 4.5e-32 142.1 132 61.4
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 5.9e-32 141.7 166 51.8
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 7.7e-32 141.4 187 45.5
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.3e-31 140.6 137 56.9
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.7e-31 140.2 136 57.4
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.2e-31 139.8 164 50.0
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 2.9e-31 139.4 127 59.8
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 2.9e-31 139.4 139 56.1
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 3.8e-31 139.0 134 53.7
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 8.5e-31 137.9 218 41.7
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 1.5e-30 137.1 136 53.7
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.5e-30 137.1 128 57.0
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 1.5e-30 137.1 123 60.2
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 2.5e-30 136.3 132 57.6
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 5.5e-30 135.2 139 56.1
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 7.2e-30 134.8 139 52.5
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 9.5e-30 134.4 123 59.3
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.6e-29 132.5 121 58.7
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 6.1e-29 131.7 129 55.8
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 1.0e-28 131.0 119 59.7
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 1.4e-28 130.6 123 56.9
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.4e-28 130.6 134 51.5
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 1.8e-28 130.2 126 57.9
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 1.8e-28 130.2 118 59.3
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 3.0e-28 129.4 128 57.0
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 4.0e-28 129.0 223 39.0
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 5.2e-28 128.6 118 61.0
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 5.2e-28 128.6 125 56.8
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 8.8e-28 127.9 129 56.6
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 1.2e-27 127.5 124 56.5
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 1.5e-27 127.1 151 51.7
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.0e-27 126.7 161 48.4
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 3.4e-27 125.9 119 57.1
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 6.3e-26 121.7 91 64.8
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 1.1e-25 120.9 152 47.4
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 1.4e-25 120.6 92 60.9
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.4e-25 120.6 100 59.0
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 4.1e-25 119.0 91 64.8
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 7.0e-25 118.2 91 63.7
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 1.2e-24 117.5 118 54.2
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 2.0e-24 116.7 113 53.1
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.3e-23 114.0 88 63.6
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 6.6e-23 111.7 90 61.1
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 6.6e-23 111.7 121 52.1
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.1e-21 106.7 88 61.4
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 8.0e-21 104.8 114 51.8
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 1.8e-20 103.6 112 48.2
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 3.0e-20 102.8 93 60.2
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 8.9e-20 101.3 93 59.1
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 3.2e-17 92.8 152 34.9
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 9.2e-17 91.3 139 41.0
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.9e-14 83.6 86 55.8
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.8e-12 77.0 141 36.2
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 1.8e-12 77.0 117 38.5
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 3.0e-07 59.7 62 51.6
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 4.3e-06 55.8 41 63.4


User provided reference genes

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