Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 0.0e+00 1189.9 613 100.0
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.3e-276 955.3 571 88.6
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.3e-223 779.2 599 70.3
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.3e-223 779.2 599 70.3
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 8.0e-213 744.2 629 66.5
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 3.2e-185 652.5 549 64.1
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 3.1e-132 476.5 521 51.6
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.4e-118 429.5 555 43.8
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 2.8e-117 426.8 545 45.0
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.8e-117 426.8 595 45.0
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.7e-114 417.5 609 44.5
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.7e-114 417.5 594 42.6
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.9e-113 414.1 589 42.4
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 2.3e-111 407.1 598 40.6
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 3.4e-110 403.3 526 44.3
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 7.5e-110 402.1 539 43.0
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 7.5e-110 402.1 585 41.9
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 3.7e-109 399.8 540 42.6
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 8.3e-109 398.7 591 42.0
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 1.8e-108 397.5 532 42.9
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 1.8e-108 397.5 533 42.0
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 5.4e-108 396.0 596 39.8
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 7.0e-108 395.6 598 40.3
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.2e-107 394.8 529 43.5
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 1.6e-107 394.4 594 40.6
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 2.0e-107 394.0 528 41.7
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.0e-107 394.0 532 42.7
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 2.0e-107 394.0 582 41.4
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 2.0e-107 394.0 584 39.9
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 3.5e-107 393.3 530 42.1
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 4.5e-107 392.9 528 41.5
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 1.3e-106 391.3 525 42.1
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 1.3e-106 391.3 532 42.3
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.7e-106 391.0 525 42.9
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 2.3e-106 390.6 528 41.5
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 2.3e-106 390.6 530 41.9
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 5.0e-106 389.4 529 43.3
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 5.0e-106 389.4 537 41.0
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 5.0e-106 389.4 581 40.6
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 5.0e-106 389.4 446 51.1
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 6.6e-106 389.0 538 40.9
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 6.6e-106 389.0 536 41.2
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 8.6e-106 388.7 526 42.2
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 1.1e-105 388.3 536 42.4
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 2.5e-105 387.1 528 40.9
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 2.5e-105 387.1 585 40.7
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 2.5e-105 387.1 521 41.8
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 2.5e-105 387.1 595 39.0
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 3.3e-105 386.7 528 40.9
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 3.3e-105 386.7 601 40.1
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 3.3e-105 386.7 526 40.9
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 4.3e-105 386.3 594 39.4
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 5.6e-105 386.0 539 40.8
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 5.6e-105 386.0 532 41.4
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 5.6e-105 386.0 604 40.9
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 5.6e-105 386.0 526 40.9
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 7.3e-105 385.6 581 40.8
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 7.3e-105 385.6 535 41.3
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 9.5e-105 385.2 533 42.0
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.6e-104 384.4 525 41.9
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.6e-104 384.4 558 41.2
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 8.0e-104 382.1 532 41.4
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 8.0e-104 382.1 521 42.0
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 2.3e-103 380.6 580 38.4
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 4.0e-103 379.8 599 40.6
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 5.2e-103 379.4 540 41.9
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 6.8e-103 379.0 586 39.4
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 8.9e-103 378.6 536 42.7
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.2e-102 378.3 583 38.4
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.2e-102 378.3 588 37.8
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.5e-102 377.9 580 39.7
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 1.5e-102 377.9 580 38.4
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 2.0e-102 377.5 597 39.7
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.6e-102 377.1 600 39.0
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 2.6e-102 377.1 539 39.1
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 5.7e-102 375.9 585 38.5
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 5.7e-102 375.9 541 42.3
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 7.5e-102 375.6 586 38.6
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 9.8e-102 375.2 581 38.7
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 2.9e-101 373.6 589 40.9
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 4.9e-101 372.9 543 40.9
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 6.4e-101 372.5 594 38.6
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 8.3e-101 372.1 586 38.2
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 2.4e-100 370.5 521 40.9
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.2e-100 370.2 521 42.4
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 7.0e-100 369.0 581 38.6
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 1.6e-99 367.9 589 37.7
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.5e-99 366.7 525 40.6
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 3.5e-99 366.7 526 40.3
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 4.6e-99 366.3 603 38.5
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 5.9e-99 365.9 586 39.9
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 7.8e-99 365.5 581 38.2
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.3e-98 364.0 714 37.3
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 3.0e-98 363.6 587 37.8
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 1.5e-97 361.3 548 40.9
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 2.5e-97 360.5 548 40.9
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 7.3e-97 359.0 591 38.9
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 1.2e-96 358.2 451 48.3
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.2e-96 358.2 538 38.3
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.2e-96 358.2 497 41.9
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.6e-96 357.8 524 41.4
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.8e-96 357.1 549 39.0
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 4.7e-96 356.3 522 40.8
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 1.8e-95 354.4 596 37.6
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 4.0e-95 353.2 540 38.0
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 5.2e-95 352.8 586 38.6
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 5.2e-95 352.8 596 38.3
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 1.2e-94 351.7 570 37.7
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 4.9e-93 346.3 512 39.1
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 4.9e-93 346.3 580 36.7
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 1.1e-92 345.1 512 39.1
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 2.4e-92 344.0 502 39.8
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 7.0e-92 342.4 515 41.4
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.6e-91 341.3 530 39.4
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 1.0e-90 338.6 536 39.0
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.3e-90 337.4 551 38.1
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 8.1e-88 328.9 533 38.5
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 4.4e-86 323.2 506 39.1
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 7.5e-86 322.4 531 38.4
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 1.9e-84 317.8 665 33.4
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.9e-84 317.8 583 36.0
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.2e-83 315.1 521 35.7
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 3.5e-83 313.5 518 38.4
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 6.0e-83 312.8 557 37.0
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 5.1e-82 309.7 556 37.2
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 6.6e-82 309.3 483 38.5
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 4.3e-81 306.6 599 35.4
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 6.4e-69 266.2 601 32.6
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 3.5e-67 260.4 586 31.4
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 7.3e-65 252.7 486 36.6
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.8e-64 250.8 498 36.9
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 3.4e-62 243.8 185 57.8
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.3e-61 241.9 453 38.0
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 6.4e-61 239.6 397 37.8
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 3.1e-55 220.7 329 40.1
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 6.4e-53 213.0 165 57.6
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 9.6e-49 199.1 157 54.8
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 7.9e-35 152.9 258 36.4
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.1e-28 132.5 117 51.3
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 5.5e-28 130.2 189 39.7
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 3.6e-27 127.5 119 52.1
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 3.6e-27 127.5 165 47.3
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 1.1e-25 122.5 161 44.7
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.6e-25 121.3 115 53.9
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 1.1e-23 115.9 159 42.1
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 1.2e-22 112.5 179 37.4
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 8.5e-21 106.3 312 32.1
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.8e-18 98.6 90 50.0
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.3e-17 94.4 119 42.0
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.7e-16 92.0 120 40.8
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 2.2e-13 81.6 140 35.0
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 2.9e-13 81.3 276 29.7
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 3.8e-13 80.9 68 51.5
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 8.5e-13 79.7 99 42.4
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 6.1e-11 73.6 69 60.9
CDE04G1628 Ceratophyllum demersum HOM05D000041 ORTHO05D006140 4.5e-06 57.4 112 30.4
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 7.7e-06 56.6 112 34.8


User provided reference genes

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