Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_18240 Physcomitrium patens HOM05D008372 ORTHO05D010559 4.8e-224 780.8 383 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1277 Anthoceros agrestis HOM05D008372 ORTHO05D010559 1.0e-101 374.4 305 61.3
CBR_g23242 Chara braunii HOM05D008372 ORTHO05D010559 1.1e-98 364.4 283 60.4
SMO356G0307 Selaginella moellendorffii HOM05D008372 ORTHO05D010559 1.6e-97 360.5 283 61.5
Mapoly0081s0037 Marchantia polymorpha HOM05D008372 ORTHO05D010559 1.5e-95 354.0 332 54.8
QL02p051398 Quercus lobata HOM05D008372 ORTHO05D010559 4.6e-89 332.4 288 58.7
Rhsim10G0067200 Rhododendron simsii HOM05D008372 ORTHO05D010559 4.6e-89 332.4 281 58.4
Dinv34822 Davidia involucrata HOM05D008372 ORTHO05D010559 5.9e-89 332.0 300 56.7
Nitab4.5_0004398g0020 Nicotiana tabacum HOM05D008372 ORTHO05D010559 5.9e-89 332.0 281 58.7
CSS0004693 Camellia sinensis var. sinensis HOM05D008372 ORTHO05D010559 3.9e-88 329.3 292 56.8
CSS0035068 Camellia sinensis var. sinensis HOM05D008372 ORTHO05D010559 8.6e-88 328.2 292 56.5
SGA_v2.0_scaffold329G48876 Striga asiatica HOM05D008372 ORTHO05D010559 8.6e-88 328.2 289 55.4
Aqoxy3G00272 Aquilegia oxysepala HOM05D008372 ORTHO05D010559 1.5e-87 327.4 285 57.5
Ciclev10013657m.g Citrus clementina HOM05D008372 ORTHO05D010559 3.3e-87 326.2 284 56.7
GSVIVG01031022001 Vitis vinifera HOM05D008372 ORTHO05D010559 3.3e-87 326.2 281 58.4
Actinidia36321 Actinidia chinensis HOM05D008372 ORTHO05D010559 5.6e-87 325.5 285 57.2
COL.COLO4_09329 Corchorus olitorius HOM05D008372 ORTHO05D010559 5.6e-87 325.5 284 56.0
Prupe.8G147100 Prunus persica HOM05D008372 ORTHO05D010559 7.3e-87 325.1 281 58.0
PSO384G0617 Papaver somniferum HOM05D008372 ORTHO05D010559 1.0e-85 321.2 281 55.9
PGSC0003DMG400024192 Solanum tuberosum HOM05D008372 ORTHO05D010559 3.1e-85 319.7 281 56.2
Cpa.g.sc282.9 Carica papaya HOM05D008372 ORTHO05D010559 5.2e-85 318.9 265 60.8
CANSAT78G1639 Cannabis sativa HOM05D008372 ORTHO05D010559 1.2e-84 317.8 281 54.1
Thecc.04G133800 Theobroma cacao HOM05D008372 ORTHO05D010559 2.6e-84 316.6 295 54.2
Sopen02g014250 Solanum pennellii HOM05D008372 ORTHO05D010559 4.4e-84 315.8 281 54.8
CAN.G225.5 Capsicum annuum HOM05D008372 ORTHO05D010559 1.1e-82 311.2 314 51.9
PSO339G4146 Papaver somniferum HOM05D008372 ORTHO05D010559 1.4e-82 310.8 286 53.8
Gohir.A07G173100 Gossypium hirsutum HOM05D008372 ORTHO05D010559 1.9e-82 310.5 284 56.0
Gorai.001G202000 Gossypium raimondii HOM05D008372 ORTHO05D010559 1.9e-82 310.5 284 56.3
Gohir.D07G181100 Gossypium hirsutum HOM05D008372 ORTHO05D010559 2.4e-82 310.1 284 56.0
TAR629G0699 Trochodendron aralioides HOM05D008372 ORTHO05D010559 9.2e-82 308.1 285 55.8
Nn4g23872 Nelumbo nucifera HOM05D008372 ORTHO05D010559 1.2e-78 297.7 261 57.9
HPP92_024422 Vanilla planifolia HOM05D008372 ORTHO05D010559 1.2e-76 291.2 287 50.9
Atru.chr1.1698 Acer truncatum HOM05D008372 ORTHO05D010559 5.4e-74 282.3 248 55.6
PGR004G0240 Punica granatum HOM05D008372 ORTHO05D010559 1.6e-73 280.8 308 49.0
CANSAT78G1437 Cannabis sativa HOM05D008372 ORTHO05D010559 6.0e-73 278.9 240 57.1
Haze_14152 Corylus avellana HOM05D008372 ORTHO05D010559 6.0e-73 278.9 289 52.9
Cfa007923 Carpinus fangiana HOM05D006225 ORTHO05D010559 1.0e-72 278.1 243 59.7
Nitab4.5_0001217g0010 Nicotiana tabacum HOM05D008372 ORTHO05D010559 5.4e-66 255.8 268 50.7
Nn8g38834 Nelumbo nucifera HOM05D008372 ORTHO05D010559 2.0e-60 237.3 224 54.9
PRCOL_00000444 Prasinoderma coloniale HOM05D008372 ORTHO05D010559 2.6e-60 236.9 260 48.5
Nn1g03461 Nelumbo nucifera HOM05D008372 ORTHO05D010559 3.4e-60 236.5 237 52.3
SEGI_35369 Sequoiadendron giganteum HOM05D008372 ORTHO05D010559 1.5e-52 211.1 168 63.7
Migut.L00318 Erythranthe guttata HOM05D008372 ORTHO05D010559 2.1e-46 190.7 142 62.0
Solyc02g063190.2 Solanum lycopersicum HOM05D008372 ORTHO05D010559 3.3e-39 166.8 121 60.3
Peaxi162Scf00501g00324 Petunia axillaris HOM05D008372 ORTHO05D010559 5.3e-37 159.5 122 62.3
Cc07_g08820 Coffea canephora HOM05D008372 ORTHO05D010559 1.3e-35 154.8 137 52.6
Solyc02g063180.4 Solanum lycopersicum HOM05D008372 ORTHO05D010559 9.6e-31 138.7 133 54.1
Peaxi162Scf00501g00319 Petunia axillaris HOM05D008372 ORTHO05D010559 6.3e-30 136.0 133 54.9
Nn1g03560 Nelumbo nucifera HOM05D008372 ORTHO05D010559 5.3e-29 132.9 214 40.2
Oeu008425.1 Olea europaea HOM05D008372 ORTHO05D010559 9.0e-29 132.1 149 49.0
RcHm_v2.0_Chr6g0252551 Rosa chinensis HOM05D008372 ORTHO05D010559 6.5e-27 125.9 82 69.5
Nn4g22381 Nelumbo nucifera HOM05D008372 ORTHO05D010559 6.1e-25 119.4 139 48.9
Nn7g36676 Nelumbo nucifera HOM05D008372 ORTHO05D010559 1.5e-23 114.8 132 48.5
Potri.004G099466 Populus trichocarpa HOM05D008372 ORTHO05D010559 1.2e-17 95.1 97 52.6
Actinidia15884 Actinidia chinensis HOM05D008372 ORTHO05D010559 1.6e-17 94.7 101 54.5
vmacro05555 Vaccinium macrocarpon HOM05D006225 ORTHO05D007676 1.6e-09 68.2 114 37.7


User provided reference genes

Program Settings