Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_17980 Physcomitrium patens HOM05D006843 ORTHO05D008517 9.2e-237 823.2 415 100.0
Mapoly0001s0246 Marchantia polymorpha HOM05D006843 ORTHO05D008517 7.1e-96 355.1 309 58.6
BcaC06g32719 Brassica carinata HOM05D006843 ORTHO05D008517 9.3e-80 301.6 310 51.6
Thecc.07G035800 Theobroma cacao HOM05D006843 ORTHO05D008517 1.2e-79 301.2 304 52.6
Manes.03G129700 Manihot esculenta HOM05D006843 ORTHO05D008517 2.7e-79 300.1 305 52.5
MELO3C013160.2 Cucumis melo HOM05D006843 ORTHO05D008517 7.9e-79 298.5 308 53.6
Thhalv10025611m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 1.0e-78 298.1 306 52.3
Duzib268G1400 Durio zibethinus HOM05D006843 ORTHO05D008517 1.3e-78 297.7 307 51.5
AL7G25850 Arabidopsis lyrata HOM05D006843 ORTHO05D008517 2.3e-78 297.0 305 52.1
Gohir.A01G079900 Gossypium hirsutum HOM05D006843 ORTHO05D008517 2.3e-78 297.0 304 52.0
C07p55080 Brassica napus HOM05D006843 ORTHO05D008517 3.0e-78 296.6 331 49.5
Gohir.D01G067100 Gossypium hirsutum HOM05D006843 ORTHO05D008517 3.0e-78 296.6 304 52.0
Prupe.4G214500 Prunus persica HOM05D006843 ORTHO05D008517 3.0e-78 296.6 304 53.0
A03p56990 Brassica napus HOM05D006843 ORTHO05D008517 3.9e-78 296.2 307 51.5
PGR083G2310 Punica granatum HOM05D006843 ORTHO05D008517 5.1e-78 295.8 366 47.8
AT4G26980 Arabidopsis thaliana HOM05D006843 ORTHO05D008517 6.7e-78 295.4 305 51.8
Carub.0007s1386 Capsella rubella HOM05D006843 ORTHO05D008517 6.7e-78 295.4 305 51.8
Sabra11G0086300 Salix brachista HOM05D006843 ORTHO05D008517 6.7e-78 295.4 331 49.5
Cpa.g.sc12.302 Carica papaya HOM05D006843 ORTHO05D008517 1.1e-77 294.7 307 52.8
Ca_06326_v3 Cicer arietinum L. HOM05D006843 ORTHO05D008517 1.1e-77 294.7 311 53.1
CsaV3_7G021850 Cucumis sativus L. HOM05D006843 ORTHO05D008517 1.1e-77 294.7 306 53.3
VMungo0647G1675 Vigna mungo HOM05D006843 ORTHO05D008517 1.9e-77 293.9 305 52.5
Ciclev10008752m.g Citrus clementina HOM05D006843 ORTHO05D008517 3.3e-77 293.1 304 51.0
Gorai.002G089000 Gossypium raimondii HOM05D006843 ORTHO05D008517 5.7e-77 292.4 304 51.3
Potri.011G090700 Populus trichocarpa HOM05D006843 ORTHO05D008517 5.7e-77 292.4 305 51.8
arahy.Tifrunner.gnm1.ann1.Q92UKX Arachis hypogaea HOM05D006843 ORTHO05D008517 7.4e-77 292.0 304 52.3
Glyma.14G022900 Glycine max HOM05D006843 ORTHO05D008517 7.4e-77 292.0 304 51.6
Medtr5g092970 Medicago truncatula HOM05D006843 ORTHO05D008517 7.4e-77 292.0 311 51.8
Glyma.02G291800 Glycine max HOM05D006843 ORTHO05D008517 2.1e-76 290.4 304 52.0
ClCG09G010830 Citrullus lanatus HOM05D006843 ORTHO05D008517 2.8e-76 290.0 306 53.3
TPR.G1211 Trifolium pratense HOM05D006843 ORTHO05D008517 2.8e-76 290.0 312 50.6
arahy.Tifrunner.gnm1.ann1.J1CT6Y Arachis hypogaea HOM05D006843 ORTHO05D008517 3.7e-76 289.7 303 51.8
Nitab4.5_0007360g0010 Nicotiana tabacum HOM05D006843 ORTHO05D008517 3.7e-76 289.7 302 51.7
Phvul.008G268300 Phaseolus vulgaris HOM05D006843 ORTHO05D008517 3.7e-76 289.7 305 51.8
Sc03g0008560 Simmondsia chinensis HOM05D006843 ORTHO05D008517 3.7e-76 289.7 299 52.2
arahy.Tifrunner.gnm1.ann1.0IA02T Arachis hypogaea HOM05D006843 ORTHO05D008517 8.2e-76 288.5 305 51.5
arahy.Tifrunner.gnm1.ann1.57CCTN Arachis hypogaea HOM05D006843 ORTHO05D008517 8.2e-76 288.5 305 51.5
arahy.Tifrunner.gnm1.ann1.BV1YAY Arachis hypogaea HOM05D006843 ORTHO05D008517 8.2e-76 288.5 305 51.5
arahy.Tifrunner.gnm1.ann1.H57FKH Arachis hypogaea HOM05D006843 ORTHO05D008517 8.2e-76 288.5 305 51.5
Lsat_1_v5_gn_7_109981 Lactuca sativa HOM05D006843 ORTHO05D008517 2.4e-75 287.0 306 52.6
MSTRG.6924 Avicennia marina HOM05D006843 ORTHO05D008517 4.1e-75 286.2 313 51.8
Psat2g011720 Pisum sativum HOM05D006843 ORTHO05D008517 5.3e-75 285.8 308 51.0
Aqoxy4G01855 Aquilegia oxysepala HOM05D006843 ORTHO05D008517 9.0e-75 285.0 308 50.3
CSS0043197 Camellia sinensis var. sinensis HOM05D006843 ORTHO05D008517 9.0e-75 285.0 315 49.5
Lalb_Chr04g0248381 Lupinus albus HOM05D006843 ORTHO05D008517 1.2e-74 284.6 310 51.3
Ah.04g165900 Amaranthus hybridus HOM05D006843 ORTHO05D008517 1.5e-74 284.3 304 51.3
AUR62015782 Chenopodium quinoa HOM05D006843 ORTHO05D008517 1.5e-74 284.3 303 51.5
Solyc07g064630.4 Solanum lycopersicum HOM05D006843 ORTHO05D008517 2.0e-74 283.9 303 51.2
Actinidia05093 Actinidia chinensis HOM05D006843 ORTHO05D008517 2.6e-74 283.5 305 51.5
CARHR234590 Cardamine hirsuta HOM05D006843 ORTHO05D008517 3.4e-74 283.1 305 50.8
TAR624G1415 Trochodendron aralioides HOM05D006843 ORTHO05D008517 3.4e-74 283.1 304 50.7
Peaxi162Scf00235g00218 Petunia axillaris HOM05D006843 ORTHO05D008517 4.5e-74 282.7 303 51.5
QL08p010009 Quercus lobata HOM05D006843 ORTHO05D008517 4.5e-74 282.7 307 50.2
GSVIVG01037656001 Vitis vinifera HOM05D006843 ORTHO05D008517 4.5e-74 282.7 303 51.2
Nitab4.5_0003495g0070 Nicotiana tabacum HOM05D006843 ORTHO05D008517 5.9e-74 282.3 303 50.8
Cc05_g13830 Coffea canephora HOM05D006843 ORTHO05D008517 7.6e-74 282.0 304 49.7
Hma1.2p1_0673F.1_g201400 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 7.6e-74 282.0 303 50.2
Aa31LG5G10440 Aethionema arabicum HOM05D006843 ORTHO05D008517 1.7e-73 280.8 317 49.2
CANSAT11G0475 Cannabis sativa HOM05D006843 ORTHO05D008517 2.2e-73 280.4 304 52.0
Migut.M01756 Erythranthe guttata HOM05D006843 ORTHO05D008517 2.2e-73 280.4 312 51.0
LjContig00272g0007634 Lotus japonicus HOM05D006843 ORTHO05D008517 2.2e-73 280.4 302 51.3
MBI18_g14135_MAGBIO Magnolia biondii HOM05D006843 ORTHO05D008517 2.9e-73 280.0 344 46.8
MD11G1217200 Malus domestica HOM05D006843 ORTHO05D008517 2.9e-73 280.0 303 51.2
Dinv22258 Davidia involucrata HOM05D006843 ORTHO05D008517 3.8e-73 279.6 287 53.3
HanXRQChr11g0337271 Helianthus annuus HOM05D006843 ORTHO05D008517 5.0e-73 279.3 304 50.0
CiPaw.11G190100 Carya illinoinensis HOM05D006843 ORTHO05D008517 6.5e-73 278.9 304 49.7
Rhsim06G0217400 Rhododendron simsii HOM05D006843 ORTHO05D008517 6.5e-73 278.9 304 50.0
Eucgr.F00758 Eucalyptus grandis HOM05D006843 ORTHO05D008517 1.9e-72 277.3 304 50.7
PGSC0003DMG402022316 Solanum tuberosum HOM05D006843 ORTHO05D008517 1.9e-72 277.3 303 50.2
TWI39G1240 Tripterygium wilfordii HOM05D006843 ORTHO05D008517 2.5e-72 276.9 307 49.8
Sed0013659 Sechium edule HOM05D006843 ORTHO05D008517 3.2e-72 276.6 308 50.6
THA.LOC104809268 Tarenaya hassleriana HOM05D006843 ORTHO05D008517 3.2e-72 276.6 304 48.7
Haze_09681 Corylus avellana HOM05D006843 ORTHO05D008517 4.2e-72 276.2 304 49.3
Sopen07g032830 Solanum pennellii HOM05D006843 ORTHO05D008517 1.2e-71 274.6 310 49.7
Cfa020337 Carpinus fangiana HOM05D006843 ORTHO05D008517 2.1e-71 273.9 307 49.2
Nn1g03519 Nelumbo nucifera HOM05D006843 ORTHO05D008517 2.7e-71 273.5 342 45.9
ECA236G1023 Erigeron canadensis HOM05D006843 ORTHO05D008517 2.3e-70 270.4 305 49.2
FAN25G2076 Fragaria x ananassa HOM05D006843 ORTHO05D008517 3.3e-69 266.5 303 49.5
RcHm_v2.0_Chr5g0040061 Rosa chinensis HOM05D006843 ORTHO05D008517 3.3e-69 266.5 304 49.3
FvH4_3g22820 Fragaria vesca HOM05D006843 ORTHO05D008517 4.3e-69 266.2 303 49.5
CiPaw.12G130200 Carya illinoinensis HOM05D006843 ORTHO05D008517 7.4e-69 265.4 305 48.9
FAN16G2069 Fragaria x ananassa HOM05D006843 ORTHO05D008517 7.4e-69 265.4 303 49.8
HPP92_013325 Vanilla planifolia HOM05D006843 ORTHO05D008517 1.3e-68 264.6 301 49.8
SGA_v2.0_scaffold165G38275 Striga asiatica HOM05D006843 ORTHO05D008517 2.8e-68 263.5 322 46.3
BolC7t46005H Brassica oleracea HOM05D006843 ORTHO05D008517 6.3e-68 262.3 272 52.6
BraA03t14769Z Brassica rapa HOM05D006843 ORTHO05D008517 6.3e-68 262.3 280 51.4
EL10Ac4g07802 Beta vulgaris HOM05D006843 ORTHO05D008517 1.0e-65 255.0 352 43.5
DCAR_012722 Daucus carota HOM05D006843 ORTHO05D008517 1.3e-65 254.6 302 46.7
CBR_g34195 Chara braunii HOM05D006843 ORTHO05D008517 1.1e-64 251.5 363 41.0
CAN.G337.136 Capsicum annuum HOM05D006843 ORTHO05D008517 7.2e-64 248.8 268 52.2
Zm00001eb224560 Zea mays HOM05D006843 ORTHO05D008517 7.2e-64 248.8 270 50.0
Zm00001eb273720 Zea mays HOM05D006843 ORTHO05D008517 1.6e-63 247.7 271 48.7
unitig_8.g4621 Utricularia gibba HOM05D006843 ORTHO05D008517 4.6e-63 246.1 340 44.1
SMO234G0011 Selaginella moellendorffii HOM05D006843 ORTHO05D008517 1.8e-62 244.2 259 49.8
Hma1.2p1_0673F.1_g201390 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 3.0e-62 243.4 303 45.9
PSO063G3629 Papaver somniferum HOM05D006843 ORTHO05D008517 1.5e-58 231.1 297 44.4
PSO170G2271 Papaver somniferum HOM05D006843 ORTHO05D008517 2.6e-58 230.3 297 44.4
Lj8A169G88 Lonicera japonica HOM05D006843 ORTHO05D008517 6.1e-55 219.2 298 44.3
AUR62020435 Chenopodium quinoa HOM05D006843 ORTHO05D008517 1.8e-54 217.6 364 40.1
Thhalv10026846m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 2.6e-45 187.2 268 43.7
Atru.chr2.3418 Acer truncatum HOM05D006843 ORTHO05D008517 2.0e-34 151.0 134 55.2
ATR0490G005 Amborella trichopoda HOM05D006843 ORTHO05D008517 3.2e-32 143.7 184 47.3
Psat4g156200 Pisum sativum HOM05D006843 ORTHO05D008517 3.0e-30 137.1 123 54.5
Psat5g064560 Pisum sativum HOM05D006843 ORTHO05D008517 6.8e-30 136.0 123 53.7
Psat7g029280 Pisum sativum HOM05D006843 ORTHO05D008517 2.6e-29 134.0 123 52.0
Hund02000 Selenicereus undatus HOM05D006843 ORTHO05D008517 9.8e-29 132.1 165 43.6
Os06g0679700 Oryza sativa ssp. japonica HOM05D006843 ORTHO05D008517 2.8e-28 130.6 160 45.0
MCO05G180 Micromonas commoda HOM05D006843 ORTHO05D008517 1.2e-23 115.2 211 35.5
vmacro11722 Vaccinium macrocarpon HOM05D006843 ORTHO05D008517 1.2e-23 115.2 176 37.5
Haze_01866 Corylus avellana HOM05D006843 ORTHO05D008517 6.8e-22 109.4 190 37.9
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 8.9e-22 109.0 119 48.7
Psat3g185160 Pisum sativum HOM05D006843 ORTHO05D008517 2.0e-18 97.8 82 57.3
CDE02G2447 Ceratophyllum demersum HOM05D006843 ORTHO05D008517 1.0e-17 95.5 199 32.2
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 1.3e-17 95.1 82 56.1
Dinv20053 Davidia involucrata HOM05D006843 ORTHO05D008517 4.0e-06 57.0 124 35.5


User provided reference genes

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