Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 2.6e-250 868.2 435 100.0
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 8.2e-111 404.8 325 58.5
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 1.8e-110 403.7 328 57.9
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.4e-110 403.3 332 58.1
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 2.4e-110 403.3 324 59.9
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 4.1e-110 402.5 338 58.6
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.2e-109 401.0 334 57.2
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.2e-109 401.0 333 57.4
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 3.4e-109 399.4 303 60.7
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 4.5e-109 399.1 374 52.7
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 4.5e-109 399.1 328 57.3
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 7.7e-109 398.3 334 56.9
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 7.7e-109 398.3 334 56.9
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.7e-109 398.3 324 58.3
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.3e-108 397.5 318 57.5
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.3e-108 397.5 318 57.5
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.3e-108 397.5 334 56.9
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.3e-108 397.5 338 55.6
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 1.7e-108 397.1 302 60.6
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 2.2e-108 396.7 303 61.1
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.2e-108 396.7 340 56.8
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.9e-108 396.4 303 60.1
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 2.9e-108 396.4 317 58.0
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.8e-108 396.0 334 56.6
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 8.5e-108 394.8 318 57.2
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.1e-107 394.4 322 59.0
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 1.4e-107 394.0 320 56.9
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 1.4e-107 394.0 314 58.6
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 1.4e-107 394.0 318 59.4
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 1.4e-107 394.0 316 57.9
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 1.9e-107 393.7 336 55.1
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 2.5e-107 393.3 318 58.8
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 2.5e-107 393.3 316 57.9
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 3.2e-107 392.9 333 55.6
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 4.2e-107 392.5 314 58.6
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.2e-107 392.5 305 60.0
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 7.2e-107 391.7 297 60.6
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 7.2e-107 391.7 321 58.6
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 9.4e-107 391.3 333 54.7
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 9.4e-107 391.3 301 59.8
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 9.4e-107 391.3 327 57.5
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 1.2e-106 391.0 316 57.0
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 1.2e-106 391.0 316 58.5
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.6e-106 390.6 318 57.9
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.6e-106 390.6 303 58.7
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.6e-106 390.6 303 59.7
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.6e-106 390.6 301 60.5
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 2.1e-106 390.2 323 59.4
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.1e-106 390.2 325 57.5
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 2.7e-106 389.8 303 58.7
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 2.7e-106 389.8 366 52.5
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.7e-106 389.8 319 59.2
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 2.7e-106 389.8 319 59.2
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 3.6e-106 389.4 321 57.9
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 3.6e-106 389.4 326 56.4
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 3.6e-106 389.4 303 59.7
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 4.7e-106 389.0 316 56.0
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 4.7e-106 389.0 303 58.7
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 4.7e-106 389.0 315 58.1
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 6.1e-106 388.7 302 59.3
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 6.1e-106 388.7 303 59.1
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 6.1e-106 388.7 327 56.0
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 7.9e-106 388.3 337 56.7
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 7.9e-106 388.3 316 57.3
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 7.9e-106 388.3 333 57.1
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 7.9e-106 388.3 324 57.7
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 7.9e-106 388.3 301 59.8
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 1.0e-105 387.9 360 56.4
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 1.4e-105 387.5 327 57.2
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 1.4e-105 387.5 319 56.7
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.4e-105 387.5 333 54.4
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.4e-105 387.5 327 56.0
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 1.8e-105 387.1 328 55.8
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 2.3e-105 386.7 321 57.6
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-105 386.7 320 58.1
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 2.3e-105 386.7 303 59.1
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.3e-105 386.7 331 55.9
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 2.3e-105 386.7 337 53.4
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 3.0e-105 386.3 333 56.2
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 3.0e-105 386.3 321 57.6
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.0e-105 386.3 324 57.4
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.9e-105 386.0 322 56.8
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 3.9e-105 386.0 335 55.2
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 5.1e-105 385.6 320 57.8
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 5.1e-105 385.6 327 57.8
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 6.7e-105 385.2 302 58.9
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 6.7e-105 385.2 302 58.9
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 6.7e-105 385.2 302 58.9
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 6.7e-105 385.2 329 56.8
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 6.7e-105 385.2 336 55.4
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 6.7e-105 385.2 335 55.5
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 8.8e-105 384.8 321 56.4
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 8.8e-105 384.8 321 56.4
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 1.1e-104 384.4 301 59.5
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.5e-104 384.0 300 59.7
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 1.5e-104 384.0 320 54.4
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 2.6e-104 383.3 328 55.8
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 3.3e-104 382.9 332 55.7
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 5.7e-104 382.1 302 58.3
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 7.4e-104 381.7 316 56.3
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 4.8e-103 379.0 334 55.4
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 4.8e-103 379.0 289 60.2
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 1.4e-102 377.5 340 54.4
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 3.1e-102 376.3 321 56.7
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 5.3e-102 375.6 301 59.1
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-101 373.6 320 55.6
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 3.5e-101 372.9 327 56.9
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 4.5e-101 372.5 316 54.7
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 4.5e-101 372.5 302 58.9
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 4.5e-101 372.5 303 57.1
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 7.7e-101 371.7 303 58.7
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 8.5e-100 368.2 326 54.9
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 3.2e-99 366.3 322 55.3
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 7.2e-99 365.2 317 56.2
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 4.7e-98 362.5 301 56.1
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 4.7e-98 362.5 356 50.6
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 1.0e-97 361.3 343 53.6
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.3e-97 360.1 313 54.6
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.5e-96 357.5 317 53.3
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 4.4e-96 355.9 292 54.8
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 7.7e-93 345.1 283 58.0
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 2.2e-92 343.6 329 52.3
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.9e-92 343.2 334 51.5
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 6.5e-92 342.0 333 49.2
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 3.6e-90 336.3 296 55.7
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 6.1e-90 335.5 288 55.2
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.8e-89 334.0 340 50.0
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 1.2e-88 331.3 304 52.6
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 7.5e-88 328.6 279 55.2
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 7.0e-86 322.0 262 56.9
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 7.0e-86 322.0 262 56.9
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 7.7e-85 318.5 288 53.5
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 2.5e-83 313.5 241 59.3
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 3.6e-82 309.7 285 54.0
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 6.1e-82 308.9 269 55.4
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 6.8e-81 305.4 277 50.9
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.6e-77 294.3 313 48.6
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.6e-74 284.3 230 57.0
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.8e-73 280.8 270 52.2
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.4e-70 271.2 359 44.8
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 3.5e-69 266.5 328 44.8
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 1.7e-68 264.2 305 45.6
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.0e-68 262.7 196 60.2
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 1.9e-67 260.8 266 51.9
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 3.6e-66 256.5 196 58.2
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 8.0e-66 255.4 281 48.4
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.7e-63 246.5 230 52.2
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.5e-61 240.0 233 51.9
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 4.7e-58 229.6 298 42.3
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 2.4e-54 217.2 221 49.3
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 3.6e-50 203.4 309 41.4
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 4.7e-50 203.0 160 60.0
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 4.7e-50 203.0 237 46.0
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-49 201.8 214 50.0
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 9.3e-38 162.2 212 43.9
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 4.2e-30 136.7 404 29.0
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 9.3e-30 135.6 121 52.1
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.2e-29 135.2 138 46.4
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 1.3e-28 131.7 94 63.8
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 3.9e-28 130.2 92 65.2
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 6.6e-28 129.4 94 63.8
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 9.6e-27 125.6 129 48.8
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 2.1e-26 124.4 129 48.1
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 8.1e-26 122.5 129 47.3
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 5.8e-24 116.3 92 60.9
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 7.1e-22 109.4 75 64.0
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 6.0e-21 106.3 74 64.9
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 1.5e-19 101.7 61 75.4
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 7.4e-19 99.4 63 73.0
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 1.3e-18 98.6 120 44.2
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 3.4e-16 90.5 97 46.4
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.7e-15 88.2 81 51.9
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 4.9e-15 86.7 249 29.3
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 4.9e-15 86.7 94 47.9
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 5.1e-12 76.6 44 75.0
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.6e-10 71.6 51 66.7
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 1.2e-08 65.5 45 64.4
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 2.6e-08 64.3 45 64.4
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 5.9e-08 63.2 42 71.4
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 5.9e-08 63.2 42 71.4
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 3.8e-07 60.5 60 53.3
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 8.4e-07 59.3 44 61.4


User provided reference genes

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