Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 0.0e+00 2475.3 1327 100.0
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 0.0e+00 2339.7 1263 99.9
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 2.5e-219 766.9 1228 42.2
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 3.3e-211 740.0 983 43.6
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 3.4e-200 703.4 1150 39.0
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 2.3e-180 637.5 1206 34.9
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 9.6e-179 632.1 1196 37.0
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.8e-177 627.9 1058 37.2
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 9.0e-177 625.5 1193 36.2
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 3.4e-176 623.6 1206 37.6
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 4.5e-176 623.2 1041 37.8
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 4.5e-176 623.2 1041 37.8
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 7.6e-176 622.5 1049 38.2
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 1.3e-175 621.7 1203 37.2
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 6.5e-175 619.4 1198 35.6
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 6.5e-175 619.4 1061 37.0
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 1.4e-174 618.2 1050 36.5
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 2.5e-174 617.5 1066 37.4
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 3.2e-174 617.1 1059 37.5
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.2e-174 617.1 1201 35.6
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 7.1e-174 615.9 1048 37.4
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 9.3e-174 615.5 1063 36.0
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 1.6e-173 614.8 1201 35.7
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 4.6e-173 613.2 1060 37.4
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 6.0e-173 612.8 1061 37.5
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 1.8e-172 611.3 1217 35.8
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 3.0e-172 610.5 1053 36.5
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 8.7e-172 609.0 1057 36.6
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 1.1e-171 608.6 1216 36.5
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 1.9e-171 607.8 1067 36.4
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 4.3e-171 606.7 1227 35.8
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 1.6e-170 604.7 1188 36.7
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 4.8e-170 603.2 1053 35.6
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 1.4e-169 601.7 1200 35.8
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 1.8e-169 601.3 1229 34.4
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 1.8e-169 601.3 1196 36.0
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 2.4e-169 600.9 1060 36.3
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 4.1e-169 600.1 1039 37.0
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 4.1e-169 600.1 1060 36.4
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 5.3e-169 599.7 1060 36.4
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 1.2e-168 598.6 1048 36.7
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 1.2e-168 598.6 1063 36.2
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 2.6e-168 597.4 1059 35.0
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 2.6e-168 597.4 1045 36.7
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 1.3e-167 595.1 1186 36.9
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 2.2e-167 594.3 1200 34.3
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 1.9e-166 591.3 1061 36.4
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 2.5e-166 590.9 1036 35.8
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 4.2e-166 590.1 1054 36.2
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 5.5e-166 589.7 1035 35.7
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 5.5e-166 589.7 1036 35.7
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 9.3e-166 589.0 1203 36.0
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 9.3e-166 589.0 1197 35.5
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 1.2e-165 588.6 1069 36.7
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 2.7e-165 587.4 1049 35.8
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 1.0e-164 585.5 1171 36.8
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 1.8e-164 584.7 1197 35.5
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 2.3e-164 584.3 1024 36.7
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 2.5e-163 580.9 1050 36.3
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 1.3e-162 578.6 1055 36.1
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 2.2e-162 577.8 1055 35.5
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 3.7e-162 577.0 1226 33.8
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 4.8e-162 576.6 1065 36.4
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 6.3e-162 576.2 1101 35.0
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 6.3e-162 576.2 1055 35.4
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 1.1e-161 575.5 1250 34.0
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 3.1e-161 573.9 1038 36.4
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 9.1e-161 572.4 1062 37.3
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 2.0e-160 571.2 1215 33.9
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 2.6e-160 570.9 1198 35.1
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 2.6e-160 570.9 1055 35.4
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 4.5e-160 570.1 1252 34.7
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 2.5e-158 564.3 1063 35.7
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 2.5e-158 564.3 1069 35.3
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 2.7e-157 560.8 1175 35.6
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 4.7e-157 560.1 1090 35.6
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 8.8e-156 555.8 1050 34.0
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 8.8e-156 555.8 1178 35.4
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 1.1e-155 555.4 1081 35.1
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 3.3e-155 553.9 1034 35.5
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 1.4e-153 548.5 1161 35.7
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 2.4e-153 547.7 1026 36.0
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 3.4e-152 543.9 1055 35.2
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 9.4e-150 535.8 1361 32.8
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 1.2e-149 535.4 1053 35.1
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 1.1e-145 522.3 1035 34.8
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 3.0e-140 504.2 1129 34.5
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 5.9e-136 490.0 986 34.2
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 1.0e-135 489.2 963 33.9
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 6.3e-130 469.9 1042 32.0
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 1.2e-123 449.1 885 35.7
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 8.6e-119 433.0 745 38.8
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 3.3e-118 431.0 1520 26.6
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 4.3e-118 430.6 832 35.7
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 7.3e-118 429.9 753 37.2
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 7.3e-118 429.9 1267 28.5
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 3.6e-109 401.0 966 31.3
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.9e-106 391.3 860 34.7
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 8.9e-92 343.2 811 34.2
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 5.8e-91 340.5 642 35.2
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 5.8e-91 340.5 642 35.2
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 9.6e-86 323.2 643 33.6
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 2.9e-82 311.6 464 40.5
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 8.7e-79 300.1 465 39.8
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 4.8e-61 241.1 436 37.4
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 4.8e-45 188.0 290 38.3
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 2.9e-26 125.6 165 42.4
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 1.4e-23 116.7 310 31.0
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.0e-19 102.8 291 26.5
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 2.8e-08 65.9 133 29.3
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 2.0e-06 59.7 99 36.4
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 9.8e-06 57.4 76 44.7


User provided reference genes

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