Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 1.3e-204 716.1 353 100.0
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 4.5e-184 647.9 353 88.4
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 8.9e-140 500.7 354 67.5
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 2.0e-139 499.6 353 66.6
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 1.3e-135 486.9 353 64.9
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 2.8e-133 479.2 353 63.7
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 3.4e-131 472.2 355 63.1
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 7.6e-131 471.1 353 63.2
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 6.4e-130 468.0 356 62.4
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 1.1e-129 467.2 357 63.0
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 1.9e-129 466.5 353 63.7
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.9e-129 466.5 353 63.7
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 2.4e-129 466.1 353 62.3
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 3.2e-129 465.7 353 63.2
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 4.1e-129 465.3 353 61.8
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 1.6e-128 463.4 356 62.6
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 1.6e-128 463.4 353 60.6
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 2.1e-128 463.0 353 62.3
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 2.1e-128 463.0 353 62.9
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 3.5e-128 462.2 354 63.3
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 4.6e-128 461.8 353 62.0
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 6.0e-128 461.5 353 60.9
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 7.8e-128 461.1 353 62.3
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 1.7e-127 459.9 355 62.8
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 2.3e-127 459.5 353 61.2
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 3.9e-127 458.8 353 62.6
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 3.9e-127 458.8 357 63.0
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 5.1e-127 458.4 355 62.0
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 8.6e-127 457.6 359 62.1
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 1.1e-126 457.2 354 61.6
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 1.1e-126 457.2 353 62.9
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 1.5e-126 456.8 356 62.1
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 1.5e-126 456.8 354 62.7
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 1.5e-126 456.8 353 62.6
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 1.9e-126 456.4 356 61.2
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 2.5e-126 456.1 354 60.7
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 3.3e-126 455.7 353 62.3
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 3.3e-126 455.7 356 61.5
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.3e-126 455.3 353 62.0
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 9.6e-126 454.1 353 61.2
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.6e-125 453.4 355 61.4
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 1.6e-125 453.4 355 61.4
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 2.1e-125 453.0 353 62.6
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 2.1e-125 453.0 353 62.0
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 2.8e-125 452.6 356 61.5
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 4.7e-125 451.8 353 60.6
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 4.7e-125 451.8 358 61.2
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 6.2e-125 451.4 360 60.6
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 6.2e-125 451.4 353 61.2
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 8.1e-125 451.1 357 59.9
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 8.1e-125 451.1 355 60.3
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 8.1e-125 451.1 355 60.0
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 8.1e-125 451.1 355 61.1
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 1.1e-124 450.7 358 59.8
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 1.1e-124 450.7 353 61.2
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 1.8e-124 449.9 353 60.6
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 2.4e-124 449.5 355 60.6
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 3.1e-124 449.1 361 61.5
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 3.1e-124 449.1 357 60.8
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 3.1e-124 449.1 355 60.3
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 8.9e-124 447.6 367 59.9
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 3.4e-123 445.7 355 60.0
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 4.4e-123 445.3 353 59.8
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 4.4e-123 445.3 353 60.6
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 5.8e-123 444.9 353 60.6
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 7.6e-123 444.5 353 59.8
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 7.6e-123 444.5 353 59.2
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 9.9e-123 444.1 353 60.6
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 1.3e-122 443.7 354 59.9
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 1.3e-122 443.7 360 59.4
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 1.3e-122 443.7 354 59.9
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 1.7e-122 443.4 354 59.3
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 2.2e-122 443.0 353 60.1
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 2.9e-122 442.6 354 59.9
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 2.9e-122 442.6 353 58.6
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 6.4e-122 441.4 356 59.6
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 1.1e-121 440.7 360 58.9
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 1.4e-121 440.3 360 59.2
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 4.2e-121 438.7 361 57.6
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 4.2e-121 438.7 361 57.3
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 5.4e-121 438.3 360 58.9
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 7.1e-121 438.0 360 58.9
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 1.2e-120 437.2 359 58.2
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 1.2e-120 437.2 353 58.4
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 1.6e-120 436.8 355 59.2
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 2.1e-120 436.4 347 61.1
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 2.7e-120 436.0 355 58.6
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 4.6e-120 435.3 365 58.4
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 6.0e-120 434.9 353 59.2
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 1.7e-119 433.3 355 58.9
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.7e-119 433.3 361 57.9
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.3e-119 433.0 359 57.7
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 3.0e-119 432.6 353 58.4
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 3.0e-119 432.6 357 58.0
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 3.0e-119 432.6 355 57.7
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 5.1e-119 431.8 360 58.6
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 5.1e-119 431.8 357 58.3
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 1.1e-118 430.6 355 58.3
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 4.3e-118 428.7 358 58.9
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 5.6e-118 428.3 360 58.1
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 1.3e-117 427.2 367 55.9
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 2.1e-117 426.4 367 56.4
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 3.6e-117 425.6 358 58.7
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 3.6e-117 425.6 353 57.8
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 6.2e-117 424.9 361 57.6
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 6.2e-117 424.9 355 57.5
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 8.1e-117 424.5 360 55.8
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 1.8e-116 423.3 360 56.4
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 5.3e-116 421.8 397 53.4
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 1.2e-115 420.6 362 57.7
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 4.5e-115 418.7 363 55.1
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 7.6e-115 417.9 355 56.3
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 7.6e-115 417.9 358 56.7
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 3.8e-114 415.6 361 54.6
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 6.4e-114 414.8 335 57.6
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 6.4e-114 414.8 359 56.3
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 6.4e-114 414.8 354 56.2
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 1.1e-113 414.1 353 57.2
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 3.2e-113 412.5 356 55.9
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 9.3e-113 411.0 355 56.6
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 3.5e-112 409.1 354 57.1
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 7.9e-112 407.9 349 58.5
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 1.0e-111 407.5 353 56.4
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 1.3e-111 407.1 355 58.3
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 2.8e-109 399.4 354 55.4
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 8.1e-109 397.9 354 54.5
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 1.4e-108 397.1 353 55.8
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 1.8e-108 396.7 353 54.4
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 3.2e-105 386.0 340 56.2
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 2.8e-101 372.9 306 59.2
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 4.0e-100 369.0 322 56.5
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 4.1e-92 342.4 354 52.3
Psat6g123080 Pisum sativum HOM05D003641 ORTHO05D004915 5.3e-92 342.0 298 56.4
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 2.2e-85 320.1 353 47.3
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 3.7e-85 319.3 276 59.1
TPR.G35793 Trifolium pratense HOM05D003641 ORTHO05D004915 2.4e-84 316.6 296 51.4
Gorai.012G099500 Gossypium raimondii HOM05D003641 ORTHO05D004915 2.0e-83 313.5 327 49.8
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 7.2e-81 305.1 357 45.1
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 3.3e-70 269.6 352 42.3
SEGI_39925 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 1.4e-68 264.2 282 49.3
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 2.3e-63 246.9 356 37.4
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 2.8e-61 240.0 213 58.2
Gohir.A04G052026 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.6e-56 224.2 156 63.5
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 1.8e-52 210.7 244 48.8
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 3.4e-46 189.9 113 77.0
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 3.7e-45 186.4 174 56.3
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 8.6e-42 175.3 124 64.5
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 4.3e-41 172.9 146 59.6
Ca_31327_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 3.4e-30 136.7 85 65.9
Ca_14569_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 9.8e-30 135.2 85 65.9
Ca_20435_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.2e-29 134.0 85 64.7
SEGI_05882 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 2.9e-29 133.7 171 43.9
Ca_09720_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 9.2e-28 128.6 85 63.5
HanXRQChr03g0083061 Helianthus annuus HOM05D003641 ORTHO05D004915 4.3e-25 119.8 138 44.2
Hund07686 Selenicereus undatus HOM05D003641 ORTHO05D011049 1.7e-21 107.8 182 36.3
MCO11G399 Micromonas commoda HOM05D003641 ORTHO05D044219 1.9e-20 104.4 167 35.9
Glyma.09G095600 Glycine max HOM05D003641 ORTHO05D004915 2.4e-20 104.0 126 44.4
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 9.2e-20 102.1 59 76.3
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 9.2e-20 102.1 59 76.3
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 7.8e-19 99.0 58 75.9
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.3e-18 97.4 58 75.9
arahy.Tifrunner.gnm1.ann1.20Y790 Arachis hypogaea HOM05D003641 ORTHO05D004915 3.0e-18 97.1 106 49.1
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 3.0e-18 97.1 55 78.2
Nn8g39306 Nelumbo nucifera HOM05D003641 ORTHO05D004915 8.6e-18 95.5 60 73.3
Cre08.g358539 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D044219 2.0e-14 84.3 171 32.2
EL10Ac8g19334 Beta vulgaris HOM05D003641 ORTHO05D027013 1.7e-13 81.3 74 48.6
Ca_03268_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 2.2e-13 80.9 59 59.3
Hund07687 Selenicereus undatus HOM05D003641 ORTHO05D021213 2.2e-13 80.9 187 32.6
arahy.Tifrunner.gnm1.ann1.XYD4PT Arachis hypogaea HOM05D003641 ORTHO05D038899 9.2e-12 75.5 62 58.1
Ca_20824_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 9.2e-12 75.5 37 75.7
PRCOL_00004577 Prasinoderma coloniale HOM05D003641 ORTHO05D049026 6.0e-11 72.8 158 29.1
TWI14G1341 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 1.0e-10 72.0 94 44.7
MCO13G471 Micromonas commoda HOM05D003641 ORTHO05D049026 5.1e-10 69.7 175 30.3
VMungo0464G0530 Vigna mungo HOM05D003641 ORTHO05D004915 9.6e-09 65.5 64 45.3
BolC1t05367H Brassica oleracea HOM05D003641 ORTHO05D038899 1.6e-08 64.7 58 55.2
CsaV3_5G015400 Cucumis sativus L. HOM05D003641 ORTHO05D004915 2.1e-08 64.3 50 58.0
SGA_v2.0_scaffold200G41266 Striga asiatica HOM05D037212 ORTHO05D027013 3.6e-08 63.5 67 40.3
PGSC0003DMG400035352 Solanum tuberosum HOM05D003641 ORTHO05D004915 5.2e-07 59.7 82 39.0
SGA_v2.0_scaffold196G40950 Striga asiatica HOM05D003641 ORTHO05D403144 9.9e-06 55.5 181 27.6


User provided reference genes

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