Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 2.2e-252 875.2 441 100.0
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 4.8e-175 618.2 389 78.4
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 2.2e-167 592.8 382 75.7
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 1.1e-163 580.5 438 65.5
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 9.7e-160 567.4 370 72.7
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.3e-159 567.0 441 65.3
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.7e-159 566.6 369 73.7
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 2.8e-159 565.8 370 72.7
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 8.2e-159 564.3 437 64.1
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 3.1e-158 562.4 357 75.6
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 1.2e-157 560.5 409 67.2
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 4.5e-157 558.5 362 73.2
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 7.7e-157 557.8 416 67.3
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 7.7e-157 557.8 374 70.9
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 1.0e-156 557.4 362 72.1
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 2.2e-156 556.2 357 74.2
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 2.9e-156 555.8 425 66.4
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 3.8e-156 555.4 357 74.2
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 5.0e-156 555.1 381 69.8
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 6.5e-156 554.7 357 73.9
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 8.5e-156 554.3 405 66.9
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 8.5e-156 554.3 405 67.2
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 1.4e-155 553.5 427 64.4
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 1.9e-155 553.1 364 71.4
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.9e-155 553.1 416 65.6
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 4.2e-155 552.0 431 64.3
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 7.2e-155 551.2 362 72.9
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 9.4e-155 550.8 401 68.1
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 9.4e-155 550.8 402 66.4
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 9.4e-155 550.8 391 68.5
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.2e-154 550.4 360 72.2
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 1.2e-154 550.4 392 68.4
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 1.6e-154 550.1 402 66.7
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 1.6e-154 550.1 368 71.2
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 1.6e-154 550.1 364 72.5
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 2.1e-154 549.7 357 72.3
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 2.1e-154 549.7 394 67.8
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.7e-154 549.3 365 71.5
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 2.7e-154 549.3 403 66.0
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 3.6e-154 548.9 397 67.0
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 4.7e-154 548.5 365 71.2
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 7.9e-154 547.7 402 65.9
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 1.4e-153 547.0 410 65.9
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 1.8e-153 546.6 362 72.1
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 1.8e-153 546.6 364 70.6
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 2.3e-153 546.2 360 71.7
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 3.0e-153 545.8 396 66.7
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 3.0e-153 545.8 406 66.3
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 3.0e-153 545.8 403 65.5
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 3.0e-153 545.8 356 73.6
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 3.9e-153 545.4 364 70.1
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 3.9e-153 545.4 393 66.7
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 3.9e-153 545.4 402 66.7
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 5.1e-153 545.0 404 66.3
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 5.1e-153 545.0 371 70.4
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 5.1e-153 545.0 369 70.2
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 6.7e-153 544.7 387 68.2
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 6.7e-153 544.7 399 65.7
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 6.7e-153 544.7 396 66.4
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 6.7e-153 544.7 366 71.6
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 8.8e-153 544.3 368 70.1
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 1.1e-152 543.9 366 71.6
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 1.5e-152 543.5 387 68.7
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 1.5e-152 543.5 401 67.1
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 1.5e-152 543.5 365 70.7
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 1.5e-152 543.5 357 72.5
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.5e-152 543.5 372 68.8
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 2.0e-152 543.1 402 65.2
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 2.6e-152 542.7 393 65.9
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 2.6e-152 542.7 361 70.9
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 3.3e-152 542.3 393 66.7
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 3.3e-152 542.3 385 68.8
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 4.4e-152 542.0 373 70.0
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 4.4e-152 542.0 366 71.3
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 4.4e-152 542.0 406 65.5
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 5.7e-152 541.6 362 71.3
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 5.7e-152 541.6 362 71.3
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 5.7e-152 541.6 386 68.1
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 7.4e-152 541.2 382 68.1
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 7.4e-152 541.2 381 68.2
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 9.7e-152 540.8 406 66.3
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 9.7e-152 540.8 402 64.9
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 1.7e-151 540.0 418 64.6
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 1.7e-151 540.0 418 64.6
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 2.2e-151 539.7 404 65.6
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 2.2e-151 539.7 404 65.6
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 2.2e-151 539.7 390 67.7
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 2.2e-151 539.7 419 64.0
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 2.8e-151 539.3 393 66.7
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 3.7e-151 538.9 402 65.9
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 3.7e-151 538.9 367 70.0
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 4.8e-151 538.5 387 67.2
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 4.8e-151 538.5 359 71.3
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 4.8e-151 538.5 387 66.9
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 4.8e-151 538.5 368 70.1
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 6.3e-151 538.1 362 70.2
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 6.3e-151 538.1 361 69.3
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 8.2e-151 537.7 386 67.9
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 1.1e-150 537.3 372 68.8
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 1.8e-150 536.6 386 67.6
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 2.4e-150 536.2 362 70.4
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 3.1e-150 535.8 362 70.4
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 4.1e-150 535.4 367 69.5
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 9.1e-150 534.3 366 68.9
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 1.2e-149 533.9 383 67.1
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 1.2e-149 533.9 386 67.4
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 2.6e-149 532.7 357 70.9
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 3.5e-149 532.3 367 69.2
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 1.0e-148 530.8 386 66.6
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 2.2e-148 529.6 391 65.7
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 3.8e-148 528.9 362 70.4
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 5.0e-148 528.5 362 70.4
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 3.2e-147 525.8 362 68.5
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 5.5e-147 525.0 377 67.1
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 5.5e-147 525.0 377 67.1
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 7.2e-147 524.6 411 65.5
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 1.2e-146 523.9 365 70.7
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 8.0e-146 521.2 359 69.9
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 3.0e-145 519.2 331 74.6
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 3.0e-145 519.2 371 67.9
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 6.7e-145 518.1 361 67.9
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 7.4e-144 514.6 393 65.9
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 7.4e-144 514.6 382 65.2
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 4.8e-143 511.9 392 65.3
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.4e-142 510.4 356 68.8
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 5.9e-141 505.0 326 73.0
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 1.7e-140 503.4 355 67.3
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 4.7e-138 495.4 331 71.3
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 4.4e-136 488.8 333 70.0
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 5.9e-133 478.4 333 70.3
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 7.7e-133 478.0 385 62.9
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 2.3e-129 466.5 368 62.0
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 3.0e-129 466.1 357 62.7
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 8.3e-127 458.0 385 60.3
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 1.6e-114 417.2 387 56.8
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.3e-111 407.5 310 64.8
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 2.6e-104 383.3 356 56.2
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 2.4e-102 376.7 362 55.5
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 3.0e-100 369.8 369 53.7
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 3.2e-94 349.7 361 50.1
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 2.0e-88 330.5 361 50.7
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 1.8e-68 264.2 254 57.5
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 5.1e-68 262.7 176 69.9
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 1.5e-67 261.2 176 69.9
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 1.3e-66 258.1 244 56.6
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 1.0e-63 248.4 179 68.7
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 1.3e-60 238.0 154 74.7
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 1.1e-59 235.0 363 37.5
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 3.7e-58 229.9 326 41.1
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.4e-57 227.3 249 49.8
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 1.7e-55 221.1 430 35.1
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 2.9e-55 220.3 220 53.6
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 6.5e-55 219.2 256 49.2
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 4.2e-46 189.9 190 53.7
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 4.2e-46 189.9 185 53.5
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 6.7e-44 182.6 174 55.7
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 5.3e-41 172.9 162 57.4
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 1.3e-39 168.3 157 55.4
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 5.0e-39 166.4 157 54.8
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 6.5e-39 166.0 108 69.4
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 1.2e-37 161.8 157 54.1
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 3.9e-36 156.8 152 53.9
RcHm_v2.0_Chr2g0097551 Rosa chinensis HOM05D003687 ORTHO05D004571 2.0e-35 154.5 148 52.7
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.3e-34 151.8 97 70.1
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 2.9e-31 140.6 147 51.7
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.7e-29 134.0 89 71.9
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 1.3e-26 125.2 83 71.1
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 5.3e-25 119.8 77 70.1
ATR0749G088 Amborella trichopoda HOM05D003687 ORTHO05D004571 9.1e-25 119.0 120 52.5
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 1.2e-24 118.6 75 73.3
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 1.6e-24 118.2 292 28.4
SalBow6G6332 Salvia bowleyana HOM05D003687 ORTHO05D004571 7.0e-17 92.8 129 44.2
SalBow7G4144 Salvia bowleyana HOM05D003687 ORTHO05D004571 9.1e-17 92.4 54 75.9
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.2e-15 87.8 55 78.2
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 6.5e-15 86.3 61 72.1
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 2.5e-14 84.3 63 76.2
ATR0208G001 Amborella trichopoda HOM05D003687 ORTHO05D067511 1.6e-13 81.6 61 65.6
SalBow6G4873 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.8e-12 78.2 63 57.1
ATR0199G031 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.8e-09 68.2 110 41.8
Sopen04g021110 Solanum pennellii HOM05D001565 ORTHO05D018129 1.0e-07 62.4 40 75.0
Psat6g182000 Pisum sativum HOM05D002062 ORTHO05D002242 3.8e-07 60.5 50 54.0
Solyc04g050430.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 6.6e-07 59.7 41 68.3
Solyc04g150135.1 Solanum lycopersicum HOM05D001565 ORTHO05D001725 1.9e-06 58.2 49 55.1
Solyc04g050403.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 5.6e-06 56.6 40 70.0
Psat3g043760 Pisum sativum HOM05D003687 ORTHO05D018418 9.5e-06 55.8 37 62.2


User provided reference genes

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