Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.7e-143 511.9 250 100.0
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.1e-55 219.9 195 52.8
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.8e-54 216.9 168 56.0
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 4.1e-54 215.7 169 55.6
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 5.1e-49 198.7 166 53.0
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.2e-44 183.3 143 53.1
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.9e-44 183.0 143 53.1
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 2.9e-44 183.0 143 53.1
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 3.8e-44 182.6 135 56.3
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 5.0e-44 182.2 143 53.1
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.9e-43 180.3 143 51.0
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 2.5e-43 179.9 143 50.3
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 3.2e-43 179.5 143 51.0
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 3.2e-43 179.5 143 51.0
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 5.5e-43 178.7 138 53.6
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 5.5e-43 178.7 143 51.0
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 7.2e-43 178.3 143 51.7
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 9.4e-43 177.9 143 52.4
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.6e-42 177.2 143 51.0
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.6e-42 177.2 143 49.0
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.1e-42 176.8 143 51.7
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.1e-42 176.8 143 52.4
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 2.1e-42 176.8 143 50.3
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 3.6e-42 176.0 143 48.3
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 3.6e-42 176.0 142 51.4
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 4.6e-42 175.6 143 50.3
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 4.6e-42 175.6 143 50.3
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 4.6e-42 175.6 143 50.3
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 6.1e-42 175.3 143 49.7
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 7.9e-42 174.9 136 54.4
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 7.9e-42 174.9 145 51.7
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.4e-41 174.1 141 51.8
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.4e-41 174.1 143 49.0
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 2.3e-41 173.3 143 49.7
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 2.3e-41 173.3 143 49.0
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 3.9e-41 172.6 143 49.7
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 3.9e-41 172.6 143 49.7
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 6.7e-41 171.8 143 47.6
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 8.8e-41 171.4 145 46.9
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 8.8e-41 171.4 143 47.6
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 8.8e-41 171.4 143 47.6
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 8.8e-41 171.4 143 48.3
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.5e-40 170.6 143 46.9
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 2.0e-40 170.2 141 53.2
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 2.0e-40 170.2 143 46.9
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 2.6e-40 169.9 142 48.6
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 3.3e-40 169.5 145 47.6
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 3.3e-40 169.5 146 48.6
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 4.4e-40 169.1 158 46.8
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 7.4e-40 168.3 143 46.9
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 9.7e-40 167.9 231 38.1
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 9.7e-40 167.9 165 46.1
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.7e-39 167.2 143 45.5
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.7e-39 167.2 143 45.5
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.7e-39 167.2 145 50.3
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.7e-39 167.2 150 47.3
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.7e-39 167.2 143 46.9
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.7e-39 167.2 143 46.9
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.7e-39 167.2 144 48.6
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.2e-39 166.8 231 38.1
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.2e-39 166.8 147 44.9
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.8e-39 166.4 143 45.5
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 2.8e-39 166.4 143 45.5
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.7e-39 166.0 143 45.5
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.7e-39 166.0 143 46.9
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.7e-39 166.0 142 45.8
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 4.8e-39 165.6 143 46.9
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 4.8e-39 165.6 186 43.0
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 4.8e-39 165.6 147 45.6
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.8e-39 165.6 143 45.5
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 4.8e-39 165.6 143 46.9
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 4.8e-39 165.6 143 46.9
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 6.3e-39 165.2 147 45.6
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 8.2e-39 164.9 143 45.5
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 8.2e-39 164.9 145 44.8
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 8.2e-39 164.9 143 45.5
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.1e-38 164.5 143 44.8
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.1e-38 164.5 143 45.5
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-38 164.1 231 38.1
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.4e-38 164.1 143 46.2
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.8e-38 163.7 116 57.8
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.8e-38 163.7 143 45.5
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.8e-38 163.7 147 45.6
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.8e-38 163.7 144 45.1
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 2.4e-38 163.3 120 55.0
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 3.1e-38 162.9 154 45.5
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 4.1e-38 162.5 143 44.1
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 4.1e-38 162.5 143 45.5
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 5.3e-38 162.2 129 50.4
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 5.3e-38 162.2 143 48.3
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.2e-37 161.0 147 44.2
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 3.4e-37 159.5 120 54.2
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.4e-37 159.5 150 44.7
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 7.7e-37 158.3 134 46.3
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 7.7e-37 158.3 118 55.9
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.3e-36 157.5 196 39.3
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.7e-36 157.1 139 47.5
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.7e-36 157.1 146 43.2
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.7e-36 157.1 120 53.3
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 5.0e-36 155.6 136 45.6
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 6.5e-36 155.2 120 52.5
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 8.5e-36 154.8 143 45.5
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 3.2e-35 152.9 143 43.4
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 2.7e-34 149.8 136 46.3
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 4.7e-34 149.1 145 44.1
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 3.0e-33 146.4 151 42.4
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.0e-33 146.4 197 37.6
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 3.9e-33 146.0 107 57.0
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 8.8e-33 144.8 232 36.2
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 2.0e-32 143.7 111 52.3
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 5.7e-32 142.1 141 43.3
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 2.2e-31 140.2 153 41.2
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 4.8e-31 139.0 104 53.8
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 2.4e-30 136.7 105 50.5
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 2.4e-30 136.7 160 41.9
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 3.1e-30 136.3 105 52.4
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 9.1e-30 134.8 168 38.7
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 9.1e-30 134.8 126 46.8
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.2e-29 134.4 182 36.8
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 1.2e-29 134.4 175 38.9
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.6e-29 134.0 143 37.1
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.0e-29 133.7 143 37.1
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 7.7e-29 131.7 143 36.4
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.9e-28 129.8 143 36.4
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.9e-28 129.8 143 35.0
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.5e-27 127.5 151 42.4
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 1.9e-27 127.1 143 34.3
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 1.9e-27 127.1 143 34.3
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.5e-27 126.7 143 33.6
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 9.4e-27 124.8 143 34.3
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 9.4e-27 124.8 143 33.6
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 9.4e-27 124.8 143 33.6
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.6e-26 124.0 143 35.7
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 2.1e-26 123.6 143 33.6
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 2.1e-26 123.6 143 33.6
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 3.6e-26 122.9 143 33.6
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 6.7e-25 118.6 150 39.3
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 3.3e-24 116.3 88 54.5
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.2e-23 113.6 118 35.6
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.4e-22 110.2 87 51.7
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 5.3e-22 109.0 143 35.0
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 7.0e-22 108.6 88 50.0
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 7.0e-22 108.6 88 50.0
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 9.1e-22 108.2 88 48.9
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 2.0e-21 107.1 143 35.7
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.5e-19 100.1 87 43.7
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 4.7e-18 95.9 64 60.9
Pp3c24_270 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.3e-17 93.6 62 71.0
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 7.5e-16 88.6 154 33.1
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 1.4e-14 84.3 95 43.2
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.8e-14 84.0 79 41.8
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.7e-13 80.1 70 47.1
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 1.7e-12 77.4 63 49.2
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 2.3e-12 77.0 81 43.2
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 2.3e-12 77.0 81 43.2
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.9e-12 76.6 143 29.4
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 1.1e-11 74.7 81 42.0
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.9e-11 73.9 70 42.9
CBR_g10981 Chara braunii HOM05D060542 ORTHO05D043949 4.2e-11 72.8 141 33.3
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 7.2e-11 72.0 62 46.8
Pp3c15_19030 Physcomitrium patens HOM05D060542 ORTHO05D043949 2.1e-10 70.5 152 28.3
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 1.0e-09 68.2 55 45.5


User provided reference genes

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