Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_12820 Physcomitrium patens HOM05D006191 ORTHO05D007660 1.8e-29 132.1 75 100.0
Pp3c15_6032 Physcomitrium patens HOM05D006191 ORTHO05D007660 2.2e-27 125.2 75 96.0
CDE02G2705 Ceratophyllum demersum HOM05D006191 ORTHO05D007660 1.4e-21 105.9 75 72.0
Glyma.08G302200 Glycine max HOM05D006191 ORTHO05D007660 2.3e-21 105.1 75 73.3
DCAR_002114 Daucus carota HOM05D006191 ORTHO05D007660 3.0e-21 104.8 75 73.3
Lalb_Chr07g0183161 Lupinus albus HOM05D006191 ORTHO05D007660 3.0e-21 104.8 75 76.0
Lj6g0026433 Lotus japonicus HOM05D006191 ORTHO05D007660 5.2e-21 104.0 75 72.0
Manes.01G180500 Manihot esculenta HOM05D006191 ORTHO05D007660 5.2e-21 104.0 75 73.3
TPR.G8494 Trifolium pratense HOM05D006191 ORTHO05D007660 5.2e-21 104.0 75 72.0
Oeu030629.1 Olea europaea HOM05D006191 ORTHO05D007660 6.7e-21 103.6 75 73.3
COL.COLO4_04799 Corchorus olitorius HOM05D006191 ORTHO05D007660 8.8e-21 103.2 75 72.0
Medtr3g434780 Medicago truncatula HOM05D006191 ORTHO05D007660 8.8e-21 103.2 75 72.0
Migut.D00650 Erythranthe guttata HOM05D006191 ORTHO05D007660 1.1e-20 102.8 75 73.3
Eucgr.J01186 Eucalyptus grandis HOM05D006191 ORTHO05D007660 1.1e-20 102.8 75 73.3
Nitab4.5_0004018g0100 Nicotiana tabacum HOM05D006191 ORTHO05D007660 1.1e-20 102.8 75 72.0
Thecc.10G162100 Theobroma cacao HOM05D006191 ORTHO05D007660 1.1e-20 102.8 75 72.0
CANSAT54G1797 Cannabis sativa HOM05D006191 ORTHO05D007660 1.5e-20 102.4 75 72.0
Nn2g14883 Nelumbo nucifera HOM05D006191 ORTHO05D007660 2.0e-20 102.1 75 72.0
Nn7g36644 Nelumbo nucifera HOM05D000965 ORTHO05D000842 2.0e-20 102.1 75 72.0
GSVIVG01037255001 Vitis vinifera HOM05D006191 ORTHO05D007660 2.0e-20 102.1 75 73.3
CSS0014439 Camellia sinensis var. sinensis HOM05D006191 ORTHO05D007660 2.6e-20 101.7 75 72.0
Dinv05064 Davidia involucrata HOM05D006191 ORTHO05D007660 2.6e-20 101.7 75 70.7
Duzib106G0217 Durio zibethinus HOM05D006191 ORTHO05D007660 2.6e-20 101.7 75 72.0
Duzib128G0357 Durio zibethinus HOM05D006191 ORTHO05D007660 2.6e-20 101.7 75 72.0
Gohir.A10G183900 Gossypium hirsutum HOM05D006191 ORTHO05D007660 2.6e-20 101.7 75 72.0
Gohir.D10G191200 Gossypium hirsutum HOM05D006191 ORTHO05D007660 2.6e-20 101.7 75 72.0
Gorai.011G214000 Gossypium raimondii HOM05D006191 ORTHO05D007660 2.6e-20 101.7 75 72.0
MBI13_g01622_MAGBIO Magnolia biondii HOM05D006191 ORTHO05D007660 2.6e-20 101.7 75 70.7
TWI38G0245 Tripterygium wilfordii HOM05D006191 ORTHO05D007660 2.6e-20 101.7 75 72.0
TWI63G0884 Tripterygium wilfordii HOM05D006191 ORTHO05D007660 2.6e-20 101.7 75 72.0
TAR623G0607 Trochodendron aralioides HOM05D006191 ORTHO05D007660 2.6e-20 101.7 75 72.0
Hma1.2p1_0115F.1_g055930 Hydrangea macrophylla HOM05D006191 ORTHO05D007660 3.3e-20 101.3 75 72.0
Potri.009G071900 Populus trichocarpa HOM05D006191 ORTHO05D007660 3.3e-20 101.3 75 70.7
Sabra09G0054200 Salix brachista HOM05D006191 ORTHO05D007660 3.3e-20 101.3 75 70.7
AagrBONN_evm.TU.Sc2ySwM_362.136 Anthoceros agrestis HOM05D006191 ORTHO05D007660 4.4e-20 100.9 75 72.0
CiPaw.14G114100 Carya illinoinensis HOM05D006191 ORTHO05D007660 4.4e-20 100.9 75 70.7
Potri.001G277100 Populus trichocarpa HOM05D006191 ORTHO05D007660 4.4e-20 100.9 75 69.3
THA.LOC104819131 Tarenaya hassleriana HOM05D006191 ORTHO05D007660 4.4e-20 100.9 75 70.7
Atru.chr12.1349 Acer truncatum HOM05D006191 ORTHO05D007660 5.7e-20 100.5 75 69.3
Sopen12g034350 Solanum pennellii HOM05D006191 ORTHO05D007660 5.7e-20 100.5 75 69.3
HPP92_025477 Vanilla planifolia HOM05D006191 ORTHO05D007660 5.7e-20 100.5 75 70.7
MELO3C014567.2 Cucumis melo HOM05D006191 ORTHO05D007660 7.4e-20 100.1 75 70.7
CsaV3_6G039080 Cucumis sativus L. HOM05D006191 ORTHO05D007660 7.4e-20 100.1 75 70.7
Lsat_1_v5_gn_2_33900 Lactuca sativa HOM05D006191 ORTHO05D007660 7.4e-20 100.1 75 68.0
PGR031G0246 Punica granatum HOM05D006191 ORTHO05D007660 7.4e-20 100.1 75 69.3
Cpa.g.sc3.359 Carica papaya HOM05D006191 ORTHO05D007660 9.7e-20 99.8 75 72.0
Gohir.D13G004600 Gossypium hirsutum HOM05D006191 ORTHO05D007660 9.7e-20 99.8 75 70.7
Oeu001494.1 Olea europaea HOM05D006191 ORTHO05D007660 9.7e-20 99.8 75 70.7
Sopen11g024870 Solanum pennellii HOM05D006191 ORTHO05D007660 9.7e-20 99.8 75 69.3
PGSC0003DMG400031241 Solanum tuberosum HOM05D006191 ORTHO05D007660 9.7e-20 99.8 75 69.3
Duzib114G0719 Durio zibethinus HOM05D006191 ORTHO05D007660 1.3e-19 99.4 75 70.7
Thhalv10021870m.g Eutrema salsugineum HOM05D006191 ORTHO05D007660 1.3e-19 99.4 75 70.7
Gorai.013G005000 Gossypium raimondii HOM05D006191 ORTHO05D007660 1.3e-19 99.4 75 70.7
PSO339G4970 Papaver somniferum HOM05D006191 ORTHO05D007660 1.3e-19 99.4 75 70.7
PSO384G4772 Papaver somniferum HOM05D006191 ORTHO05D007660 1.3e-19 99.4 75 70.7
Peaxi162Scf00004g04011 Petunia axillaris HOM05D006191 ORTHO05D007660 1.3e-19 99.4 75 68.0
Sed0001199 Sechium edule HOM05D006191 ORTHO05D007660 1.3e-19 99.4 75 69.3
THA.LOC104825593 Tarenaya hassleriana HOM05D006191 ORTHO05D007660 1.3e-19 99.4 75 69.3
CARHR082640 Cardamine hirsuta HOM05D006191 ORTHO05D007660 1.7e-19 99.0 75 64.0
HanXRQChr06g0182571 Helianthus annuus HOM05D006191 ORTHO05D007660 1.7e-19 99.0 75 68.0
CAN.G484.24 Capsicum annuum HOM05D006191 ORTHO05D007660 2.2e-19 98.6 75 68.0
Thhalv10022475m.g Eutrema salsugineum HOM05D006191 ORTHO05D007660 2.2e-19 98.6 75 69.3
Potri.003G197801 Populus trichocarpa HOM05D006191 ORTHO05D007660 2.2e-19 98.6 75 72.0
Potri.T125106 Populus trichocarpa HOM05D006191 ORTHO05D007660 2.2e-19 98.6 75 72.0
Atru.chr3.2798 Acer truncatum HOM05D006191 ORTHO05D007660 2.8e-19 98.2 73 71.2
Ciclev10017371m.g Citrus clementina HOM05D006191 ORTHO05D007660 4.8e-19 97.4 73 69.9
QL01p017491 Quercus lobata HOM05D006191 ORTHO05D007660 4.8e-19 97.4 74 68.9
Sc11g0006400 Simmondsia chinensis HOM05D006191 ORTHO05D007660 4.8e-19 97.4 75 70.7
CAN.G1850.1 Capsicum annuum HOM05D006191 ORTHO05D007660 6.3e-19 97.1 75 68.0
Carub.0003s0749 Capsella rubella HOM05D006191 ORTHO05D007660 8.2e-19 96.7 72 69.4
ECA238G0093 Erigeron canadensis HOM05D006191 ORTHO05D007660 8.2e-19 96.7 75 69.3
Mapoly0046s0044 Marchantia polymorpha HOM05D006191 ORTHO05D007660 8.2e-19 96.7 71 74.6
Aa31LG5G18460 Aethionema arabicum HOM05D006191 ORTHO05D007660 1.1e-18 96.3 75 65.3
A05p40330 Brassica napus HOM05D006191 ORTHO05D007660 1.4e-18 95.9 70 71.4
AT3G07910 Arabidopsis thaliana HOM05D006191 ORTHO05D007660 1.8e-18 95.5 75 69.3
BcaC05g29581 Brassica carinata HOM05D006191 ORTHO05D007660 1.8e-18 95.5 67 73.1
A03p35550 Brassica napus HOM05D006191 ORTHO05D007660 1.8e-18 95.5 72 72.2
C03p43190 Brassica napus HOM05D006191 ORTHO05D007660 1.8e-18 95.5 72 72.2
C05p59410 Brassica napus HOM05D006191 ORTHO05D007660 1.8e-18 95.5 70 70.0
BolC3t16588H Brassica oleracea HOM05D006191 ORTHO05D007660 1.8e-18 95.5 72 72.2
BraA03t12731Z Brassica rapa HOM05D006191 ORTHO05D007660 1.8e-18 95.5 72 72.2
CDE04G1776 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 4.1e-18 94.4 75 66.7
Glyma.18G117700 Glycine max HOM05D006191 ORTHO05D007660 4.1e-18 94.4 73 68.5
BcaB04g21265 Brassica carinata HOM05D006191 ORTHO05D007660 5.3e-18 94.0 70 68.6
BolC5t34598H Brassica oleracea HOM05D006191 ORTHO05D007660 5.3e-18 94.0 67 73.1
EL10Ac2g02816 Beta vulgaris HOM05D006191 ORTHO05D007660 7.0e-18 93.6 75 68.0
Prupe.4G268400 Prunus persica HOM05D006191 ORTHO05D007660 7.0e-18 93.6 74 73.0
Solyc12g099705.1 Solanum lycopersicum HOM05D006191 ORTHO05D007660 7.0e-18 93.6 75 65.3
Sp3g06830 Schrenkiella parvula HOM05D006191 ORTHO05D007660 9.1e-18 93.2 73 68.5
MD00G1126200 Malus domestica HOM05D006191 ORTHO05D007660 1.6e-17 92.4 76 69.7
MD00G1154200 Malus domestica HOM05D006191 ORTHO05D007660 1.6e-17 92.4 76 69.7
Sabra16G0171200 Salix brachista HOM05D006191 ORTHO05D007660 4.5e-17 90.9 78 64.1
Aqoxy2G00346 Aquilegia oxysepala HOM05D006191 ORTHO05D007660 7.7e-17 90.1 67 68.7
Solyc11g150142.1 Solanum lycopersicum HOM05D006191 ORTHO05D007660 1.3e-16 89.4 68 67.6
Actinidia23986 Actinidia chinensis HOM05D006191 ORTHO05D007660 1.7e-16 89.0 68 70.6
BcaC09g47957 Brassica carinata HOM05D006191 ORTHO05D007660 1.7e-16 89.0 70 65.7
BolC1t05519H Brassica oleracea HOM05D006191 ORTHO05D007660 1.7e-16 89.0 70 65.7
SMO301G0059 Selaginella moellendorffii HOM05D006191 ORTHO05D007660 2.9e-16 88.2 68 70.6
BraA01t04352Z Brassica rapa HOM05D006191 ORTHO05D007660 8.5e-16 86.7 70 64.3
ClCG02G022950 Citrullus lanatus HOM05D006191 ORTHO05D007660 8.5e-16 86.7 47 78.7
Haze_23211 Corylus avellana HOM05D000001 ORTHO05D000003 1.5e-15 85.9 47 76.6
MCO15G227 Micromonas commoda HOM05D006191 ORTHO05D007660 1.9e-15 85.5 69 63.8
FvH4_3g28030 Fragaria vesca HOM05D006191 ORTHO05D007660 4.2e-15 84.3 75 60.0
FAN16G3748 Fragaria x ananassa HOM05D006191 ORTHO05D007660 4.2e-15 84.3 75 60.0
RcHm_v2.0_Chr5g0050711 Rosa chinensis HOM05D006191 ORTHO05D007660 4.2e-15 84.3 75 60.0
Gohir.A13G004900 Gossypium hirsutum HOM05D006191 ORTHO05D007660 5.5e-15 84.0 82 61.0
Zm00001eb432230 Zea mays HOM05D006191 ORTHO05D007660 5.5e-15 84.0 69 69.6
Cc01_g05600 Coffea canephora HOM05D006191 ORTHO05D007660 9.4e-15 83.2 72 63.9
FAN25G1591 Fragaria x ananassa HOM05D006191 ORTHO05D007660 9.4e-15 83.2 75 58.7
Lalb_Chr25g0282111 Lupinus albus HOM05D006191 ORTHO05D007660 2.1e-14 82.0 69 66.7
Cfa010050 Carpinus fangiana HOM05D000477 ORTHO05D000338 2.7e-14 81.6 66 68.2
AUR62037186 Chenopodium quinoa HOM05D006191 ORTHO05D007660 2.7e-14 81.6 47 72.3
BcaC09g47961 Brassica carinata HOM05D006191 ORTHO05D007660 3.6e-14 81.3 64 65.6
ATR0745G066 Amborella trichopoda HOM05D006191 ORTHO05D007660 6.1e-14 80.5 72 61.1
arahy.Tifrunner.gnm1.ann1.MB5P1Q Arachis hypogaea HOM05D006191 ORTHO05D007660 6.1e-14 80.5 69 66.7
FAN21G2777 Fragaria x ananassa HOM05D006191 ORTHO05D007660 6.1e-14 80.5 72 59.7
Glyma.04G138500 Glycine max HOM05D006191 ORTHO05D007660 6.1e-14 80.5 69 65.2
Phvul.005G027500 Phaseolus vulgaris HOM05D006191 ORTHO05D007660 1.0e-13 79.7 69 65.2
arahy.Tifrunner.gnm1.ann1.HDQ2FX Arachis hypogaea HOM05D006191 ORTHO05D007660 1.4e-13 79.3 69 65.2
Lalb_Chr04g0264081 Lupinus albus HOM05D006191 ORTHO05D007660 2.3e-13 78.6 69 63.8
Cre01.g010500 Chlamydomonas reinhardtii HOM05D006191 ORTHO05D007660 6.8e-13 77.0 73 41.1
Psat5g217760 Pisum sativum HOM05D006191 ORTHO05D007660 6.8e-13 77.0 69 62.3
PRCOL_00002293 Prasinoderma coloniale HOM05D006191 ORTHO05D007660 6.8e-13 77.0 72 48.6
Lj3g0010990 Lotus japonicus HOM05D006191 ORTHO05D007660 1.5e-12 75.9 69 62.3
Zm00001eb068350 Zea mays HOM05D006191 ORTHO05D007660 1.5e-12 75.9 63 69.8
TPR.G17809 Trifolium pratense HOM05D006191 ORTHO05D007660 2.0e-12 75.5 68 61.8
Medtr3g017440 Medicago truncatula HOM05D006191 ORTHO05D007660 2.6e-12 75.1 69 60.9
Rhsim01G0194500 Rhododendron simsii HOM05D000189 ORTHO05D000474 3.7e-11 71.2 41 75.6
FAN11G1162 Fragaria x ananassa HOM05D006191 ORTHO05D007660 3.8e-08 61.2 117 37.6
VMungo1080G0693 Vigna mungo HOM05D006191 ORTHO05D007660 1.9e-07 58.9 114 40.4


User provided reference genes

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