Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 8.2e-29 129.8 70 100.0
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 2.2e-10 68.6 62 58.1
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 9.4e-09 63.2 57 56.1
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 9.4e-09 63.2 67 53.7
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 1.2e-08 62.8 45 68.9
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 1.2e-08 62.8 51 62.7
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 2.7e-08 61.6 55 60.0
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 2.7e-08 61.6 64 54.7
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 3.6e-08 61.2 46 63.0
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 3.6e-08 61.2 46 65.2
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 4.7e-08 60.8 55 60.0
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 4.7e-08 60.8 56 58.9
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 4.7e-08 60.8 56 57.1
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 6.1e-08 60.5 54 59.3
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 6.1e-08 60.5 46 63.0
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 6.1e-08 60.5 48 60.4
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 8.0e-08 60.1 56 60.7
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 8.0e-08 60.1 56 58.9
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 8.0e-08 60.1 46 65.2
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 8.0e-08 60.1 46 63.0
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 8.0e-08 60.1 56 58.9
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 8.0e-08 60.1 46 63.0
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 8.0e-08 60.1 45 64.4
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 8.0e-08 60.1 54 59.3
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 1.0e-07 59.7 47 61.7
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 1.0e-07 59.7 43 67.4
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 1.0e-07 59.7 46 60.9
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 1.0e-07 59.7 55 56.4
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 1.4e-07 59.3 56 55.4
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 1.4e-07 59.3 56 55.4
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 1.8e-07 58.9 51 60.8
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 1.8e-07 58.9 44 65.9
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 1.8e-07 58.9 54 59.3
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 1.8e-07 58.9 48 60.4
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 2.3e-07 58.5 51 60.8
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 2.3e-07 58.5 48 60.4
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 2.3e-07 58.5 54 51.9
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 2.3e-07 58.5 53 58.5
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 3.0e-07 58.2 46 60.9
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 3.0e-07 58.2 45 64.4
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 3.0e-07 58.2 45 64.4
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 3.0e-07 58.2 56 57.1
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 4.0e-07 57.8 43 62.8
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 4.0e-07 57.8 46 60.9
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 4.0e-07 57.8 46 60.9
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 4.0e-07 57.8 55 56.4
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 5.2e-07 57.4 41 70.7
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 5.2e-07 57.4 41 70.7
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 5.2e-07 57.4 41 70.7
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 5.2e-07 57.4 41 70.7
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 5.2e-07 57.4 41 70.7
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 5.2e-07 57.4 41 70.7
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 5.2e-07 57.4 41 70.7
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 5.2e-07 57.4 41 70.7
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 5.2e-07 57.4 41 70.7
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 5.2e-07 57.4 43 62.8
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 5.2e-07 57.4 47 59.6
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 5.2e-07 57.4 54 59.3
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 6.7e-07 57.0 56 58.9
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 6.7e-07 57.0 41 68.3
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 6.7e-07 57.0 65 52.3
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 6.7e-07 57.0 56 55.4
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 6.7e-07 57.0 50 58.0
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 8.8e-07 56.6 55 56.4
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 8.8e-07 56.6 55 56.4
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 8.8e-07 56.6 51 58.8
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 8.8e-07 56.6 54 59.3
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 8.8e-07 56.6 54 59.3
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 8.8e-07 56.6 54 59.3
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 8.8e-07 56.6 54 59.3
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 8.8e-07 56.6 48 58.3
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 8.8e-07 56.6 63 52.4
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 8.8e-07 56.6 63 52.4
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 1.2e-06 56.2 51 58.8
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 1.2e-06 56.2 41 68.3
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.2e-06 56.2 63 52.4
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 1.2e-06 56.2 46 58.7
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 1.2e-06 56.2 45 60.0
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 1.2e-06 56.2 56 57.1
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 1.5e-06 55.8 41 68.3
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 1.5e-06 55.8 41 68.3
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.5e-06 55.8 57 52.6
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 1.5e-06 55.8 63 52.4
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 1.5e-06 55.8 63 52.4
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 1.5e-06 55.8 43 65.1
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 1.5e-06 55.8 56 55.4
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 2.0e-06 55.5 54 53.7
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 2.0e-06 55.5 54 57.4
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 2.6e-06 55.1 55 58.2
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 2.6e-06 55.1 55 58.2
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 2.6e-06 55.1 65 47.7
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 3.3e-06 54.7 65 47.7
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 3.3e-06 54.7 63 50.8
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 3.3e-06 54.7 54 57.4
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 3.3e-06 54.7 43 60.5
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 3.3e-06 54.7 43 60.5
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 4.4e-06 54.3 41 65.9
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 4.4e-06 54.3 43 58.1
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 4.4e-06 54.3 43 58.1
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 7.5e-06 53.5 48 54.2
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 7.5e-06 53.5 43 58.1


User provided reference genes

Program Settings