Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 0.0e+00 1246.9 654 100.0
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.9e-164 583.6 618 53.6
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 5.6e-156 555.4 604 52.8
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 3.2e-127 459.9 637 44.3
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 5.5e-127 459.1 574 47.2
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 7.2e-127 458.8 586 46.8
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 2.7e-126 456.8 592 47.0
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 3.6e-126 456.4 574 47.0
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 1.4e-125 454.5 626 44.9
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 8.8e-125 451.8 597 45.4
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 3.3e-124 449.9 583 46.1
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 5.7e-124 449.1 635 44.1
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 5.7e-124 449.1 609 45.2
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 9.7e-124 448.4 564 46.6
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 1.7e-123 447.6 619 43.8
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.8e-123 446.8 580 45.5
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 3.7e-123 446.4 590 46.1
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.1e-122 444.9 655 43.1
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 3.1e-122 443.4 592 46.1
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 3.1e-122 443.4 598 45.3
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.6e-121 440.3 611 42.7
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 4.5e-121 439.5 616 44.0
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 1.0e-120 438.3 593 45.0
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 1.0e-120 438.3 637 42.4
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 1.0e-120 438.3 606 43.2
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.7e-120 437.6 622 44.2
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 2.2e-120 437.2 591 45.9
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 2.2e-120 437.2 593 46.0
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 3.8e-120 436.4 594 45.3
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 6.5e-120 435.6 603 44.9
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 8.5e-120 435.3 582 45.5
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 8.5e-120 435.3 591 44.5
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 8.5e-120 435.3 592 45.3
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 8.5e-120 435.3 594 44.1
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 8.5e-120 435.3 644 42.4
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.5e-119 434.5 603 45.1
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.9e-119 434.1 618 42.7
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 3.2e-119 433.3 645 42.8
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 5.5e-119 432.6 595 43.7
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 7.2e-119 432.2 654 42.5
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 9.4e-119 431.8 597 45.4
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.2e-118 431.4 596 44.5
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 1.2e-118 431.4 607 42.7
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.6e-118 431.0 631 42.8
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 1.6e-118 431.0 581 44.4
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.7e-118 430.3 630 42.9
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 2.7e-118 430.3 580 44.5
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 3.6e-118 429.9 601 43.8
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 8.0e-118 428.7 636 42.9
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.4e-117 427.9 606 43.4
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 1.8e-117 427.6 585 43.1
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.8e-117 427.6 633 42.3
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.3e-117 427.2 597 44.9
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 3.0e-117 426.8 585 43.8
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 4.0e-117 426.4 617 44.4
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 6.7e-117 425.6 579 42.7
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.2e-116 424.9 606 43.1
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 3.3e-116 423.3 595 43.9
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 4.4e-116 422.9 588 42.9
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 4.4e-116 422.9 603 43.6
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 9.7e-116 421.8 580 43.3
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 9.7e-116 421.8 580 42.9
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 4.8e-115 419.5 588 43.4
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-114 418.3 585 43.1
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-114 418.3 591 42.6
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 1.4e-114 417.9 633 42.5
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 3.1e-114 416.8 596 43.0
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 4.1e-114 416.4 585 42.7
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 9.1e-114 415.2 562 45.0
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.2e-113 414.8 577 42.5
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 1.2e-113 414.8 629 41.5
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 1.2e-113 414.8 621 42.0
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 2.0e-113 414.1 596 42.8
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.5e-113 413.3 616 40.9
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 5.9e-113 412.5 605 42.3
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 7.7e-113 412.1 608 42.8
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 7.7e-113 412.1 608 42.8
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 7.7e-113 412.1 589 43.5
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.0e-112 411.8 588 42.3
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 1.3e-112 411.4 584 42.8
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 1.7e-112 411.0 582 43.5
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 1.7e-112 411.0 647 41.6
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.7e-112 411.0 607 44.6
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 2.2e-112 410.6 582 43.6
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 2.9e-112 410.2 588 43.2
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 8.5e-112 408.7 594 42.1
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.9e-111 407.5 593 42.8
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 4.2e-111 406.4 609 43.0
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.2e-110 404.8 576 41.8
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 2.1e-110 404.1 592 40.7
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 3.6e-110 403.3 639 41.9
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 1.8e-106 391.0 622 40.5
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 9.1e-106 388.7 621 42.0
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.0e-105 387.5 667 39.3
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 3.5e-105 386.7 654 38.7
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 4.2e-103 379.8 616 41.1
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 8.0e-102 375.6 537 43.9
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 1.4e-101 374.8 507 44.4
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 5.2e-101 372.9 547 43.0
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 8.9e-101 372.1 621 39.5
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 5.7e-100 369.4 625 40.6
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.7e-99 367.9 629 40.5
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.8e-99 367.1 468 47.2
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 5.4e-98 362.8 594 41.1
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 2.0e-97 360.9 626 39.5
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 9.5e-95 352.1 579 39.9
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 2.1e-94 350.9 586 39.1
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 2.8e-94 350.5 557 40.4
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 2.0e-92 344.4 576 38.5
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.2e-91 340.9 444 46.6
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.5e-87 328.2 587 40.0
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 4.0e-85 320.1 488 40.2
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 7.0e-82 309.3 362 48.3
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 9.2e-74 282.3 256 59.0
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 4.3e-71 273.5 492 38.2
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 3.4e-68 263.8 269 53.9
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 5.8e-68 263.1 254 56.7
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.6e-65 255.0 518 33.8
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 6.0e-65 253.1 599 33.1
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 5.1e-64 250.0 302 45.7
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 3.0e-56 224.2 354 39.3
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 3.6e-54 217.2 312 42.6
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.9e-51 207.6 280 43.9
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 8.4e-51 206.1 207 51.2
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 5.4e-50 203.4 316 42.7
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 1.1e-45 189.1 127 70.9
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.4e-45 188.7 389 35.5
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 6.4e-43 179.9 598 28.1
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.3e-40 171.4 148 64.9
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 8.7e-40 169.5 127 63.0
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 5.5e-34 150.2 130 61.5
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.7e-33 147.9 114 67.5
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 1.8e-29 135.2 106 59.4
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 5.3e-29 133.7 116 58.6
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.5e-28 132.1 181 40.9
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 2.9e-27 127.9 110 61.8
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 4.3e-23 114.0 87 66.7
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 9.7e-23 112.8 87 66.7
Pp3c3_23490 Physcomitrium patens HOM05D004142 ORTHO05D005411 1.8e-21 108.6 90 65.6
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 1.4e-18 99.0 198 36.4
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.9e-18 98.6 104 53.8
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 4.2e-18 97.4 65 69.2
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.7e-17 94.7 74 66.2
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.4e-16 92.4 68 64.7
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 8.8e-16 89.7 113 49.6
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 5.7e-15 87.0 229 31.4
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.3e-14 85.9 121 43.0
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.8e-14 84.7 256 31.6
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 3.1e-13 81.3 233 29.2
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 9.1e-13 79.7 69 58.0
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 4.5e-12 77.4 251 29.5
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 2.5e-10 71.6 100 41.0
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 7.2e-10 70.1 238 26.1
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 9.4e-10 69.7 64 56.2
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 8.0e-09 66.6 75 50.7
AagrBONN_evm.TU.Sc2ySwM_228.5283 Anthoceros agrestis HOM05D004142 ORTHO05D031210 8.8e-08 63.2 114 41.2
Mapoly0118s0038 Marchantia polymorpha HOM05D004142 ORTHO05D254901 1.3e-06 59.3 304 23.7


User provided reference genes

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