Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_12290 Physcomitrium patens HOM05D007113 ORTHO05D008859 5.4e-51 204.1 110 100.0
Pp3c15_12810 Physcomitrium patens HOM05D007113 ORTHO05D008859 2.3e-38 162.2 110 81.8
Mapoly0005s0194 Marchantia polymorpha HOM05D007113 ORTHO05D008859 4.6e-18 94.7 109 54.1
AagrBONN_evm.TU.Sc2ySwM_362.1890 Anthoceros agrestis HOM05D007113 ORTHO05D008859 2.1e-15 85.9 104 51.9
ECA238G3418 Erigeron canadensis HOM05D007113 ORTHO05D008859 1.5e-13 79.7 117 47.9
Lsat_1_v5_gn_9_63261 Lactuca sativa HOM05D007113 ORTHO05D008859 3.4e-13 78.6 110 47.3
Sed0004762 Sechium edule HOM05D007113 ORTHO05D008859 5.8e-13 77.8 86 51.2
Oeu028599.1 Olea europaea HOM05D007113 ORTHO05D008859 1.3e-12 76.6 99 46.5
Ciclev10013049m.g Citrus clementina HOM05D007113 ORTHO05D008859 1.7e-12 76.3 114 44.7
Dinv34405 Davidia involucrata HOM05D007113 ORTHO05D008859 1.7e-12 76.3 109 46.8
Gohir.D01G216000 Gossypium hirsutum HOM05D007113 ORTHO05D008859 1.7e-12 76.3 96 50.0
SalBow6G1146 Salvia bowleyana HOM05D007113 ORTHO05D008859 2.2e-12 75.9 101 47.5
CDE03G0108 Ceratophyllum demersum HOM05D007113 ORTHO05D008859 2.9e-12 75.5 118 44.1
DCAR_028817 Daucus carota HOM05D007113 ORTHO05D008859 2.9e-12 75.5 78 52.6
Aa31sc189G20 Aethionema arabicum HOM05D007113 ORTHO05D008859 3.8e-12 75.1 123 46.3
Glyma.01G114800 Glycine max HOM05D007113 ORTHO05D008859 3.8e-12 75.1 93 50.5
SEGI_10938 Sequoiadendron giganteum HOM05D007113 ORTHO05D008859 3.8e-12 75.1 67 58.2
SEGI_38672 Sequoiadendron giganteum HOM05D007113 ORTHO05D008859 3.8e-12 75.1 67 58.2
THA.LOC104805827 Tarenaya hassleriana HOM05D007113 ORTHO05D008859 3.8e-12 75.1 111 46.8
Atru.chr8.2216 Acer truncatum HOM05D007113 ORTHO05D008859 4.9e-12 74.7 111 45.0
ClCG04G007070 Citrullus lanatus HOM05D007113 ORTHO05D008859 4.9e-12 74.7 81 50.6
Phvul.010G003200 Phaseolus vulgaris HOM05D007113 ORTHO05D008859 4.9e-12 74.7 101 49.5
Gorai.002G262200 Gossypium raimondii HOM05D007113 ORTHO05D008859 6.4e-12 74.3 96 49.0
Migut.F01372 Erythranthe guttata HOM05D007113 ORTHO05D008859 8.4e-12 73.9 112 47.3
Glyma.03G063200 Glycine max HOM05D007113 ORTHO05D008859 8.4e-12 73.9 98 49.0
Gohir.A01G226400 Gossypium hirsutum HOM05D007113 ORTHO05D008859 8.4e-12 73.9 96 49.0
PSO384G2929 Papaver somniferum HOM05D007113 ORTHO05D008859 8.4e-12 73.9 118 43.2
unitig_62.g23930 Utricularia gibba HOM05D000230 ORTHO05D000176 8.4e-12 73.9 109 47.7
TWI77G0060 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 1.1e-11 73.6 96 49.0
C04p09540 Brassica napus HOM05D007113 ORTHO05D008859 1.4e-11 73.2 107 45.8
BolC4t22560H Brassica oleracea HOM05D007113 ORTHO05D008859 1.4e-11 73.2 107 45.8
CARHR132730 Cardamine hirsuta HOM05D007113 ORTHO05D008859 1.4e-11 73.2 105 47.6
PSO339G1456 Papaver somniferum HOM05D007113 ORTHO05D008859 1.4e-11 73.2 111 42.3
Cc02_g06720 Coffea canephora HOM05D007113 ORTHO05D008859 1.9e-11 72.8 73 56.2
ATR0618G049 Amborella trichopoda HOM05D007113 ORTHO05D008859 2.4e-11 72.4 88 46.6
CSS0048161 Camellia sinensis var. sinensis HOM05D007113 ORTHO05D008859 2.4e-11 72.4 119 42.9
PGR004G1045 Punica granatum HOM05D007113 ORTHO05D008859 2.4e-11 72.4 93 46.2
GSVIVG01033979001 Vitis vinifera HOM05D007113 ORTHO05D008859 2.4e-11 72.4 115 39.1
CsaV3_4G026180 Cucumis sativus L. HOM05D007113 ORTHO05D008859 3.2e-11 72.0 81 49.4
Lalb_Chr07g0193491 Lupinus albus HOM05D007113 ORTHO05D008859 3.2e-11 72.0 74 50.0
Phvul.004G171400 Phaseolus vulgaris HOM05D007113 ORTHO05D008859 3.2e-11 72.0 98 45.9
VMungo1127G1807 Vigna mungo HOM05D007113 ORTHO05D008859 3.2e-11 72.0 98 46.9
HanXRQChr14g0460151 Helianthus annuus HOM05D007113 ORTHO05D008859 4.2e-11 71.6 113 45.1
AT2G38140 Arabidopsis thaliana HOM05D007113 ORTHO05D008859 5.4e-11 71.2 106 50.0
arahy.Tifrunner.gnm1.ann1.J29A80 Arachis hypogaea HOM05D007113 ORTHO05D008859 5.4e-11 71.2 67 52.2
Nn8g40109 Nelumbo nucifera HOM05D007113 ORTHO05D008859 5.4e-11 71.2 115 39.1
TWI74G0516 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 5.4e-11 71.2 118 42.4
Medtr4g015540 Medicago truncatula HOM05D007113 ORTHO05D008859 7.1e-11 70.9 121 47.9
CDE04G2391 Ceratophyllum demersum HOM05D007113 ORTHO05D008859 9.3e-11 70.5 118 39.0
Duzib093G1147 Durio zibethinus HOM05D007113 ORTHO05D008859 9.3e-11 70.5 72 51.4
Thecc.05G019300 Theobroma cacao HOM05D007113 ORTHO05D008859 9.3e-11 70.5 69 50.7
Lj3g0022517 Lotus japonicus HOM05D007113 ORTHO05D008859 1.2e-10 70.1 100 45.0
Actinidia29691 Actinidia chinensis HOM05D007113 ORTHO05D008859 1.6e-10 69.7 70 54.3
BraA05t19755Z Brassica rapa HOM05D007113 ORTHO05D008859 2.1e-10 69.3 119 42.9
COL.COLO4_14561 Corchorus olitorius HOM05D007113 ORTHO05D008859 2.1e-10 69.3 100 46.0
MELO3C003245.2 Cucumis melo HOM05D007113 ORTHO05D008859 2.1e-10 69.3 93 45.2
Lsat_1_v5_gn_2_121221 Lactuca sativa HOM05D007113 ORTHO05D008859 2.1e-10 69.3 111 41.4
A05p07890 Brassica napus HOM05D007113 ORTHO05D008859 3.5e-10 68.6 109 47.7
Eucgr.K02991 Eucalyptus grandis HOM05D007113 ORTHO05D008859 3.5e-10 68.6 116 42.2
Cfa017230 Carpinus fangiana HOM05D007113 ORTHO05D008859 4.6e-10 68.2 67 50.7
Haze_20976 Corylus avellana HOM05D007113 ORTHO05D008859 6.0e-10 67.8 116 40.5
Sc11g0007190 Simmondsia chinensis HOM05D007113 ORTHO05D008859 6.0e-10 67.8 107 42.1
arahy.Tifrunner.gnm1.ann1.62SCQ6 Arachis hypogaea HOM05D007113 ORTHO05D008859 7.8e-10 67.4 64 53.1
MD04G1149600 Malus domestica HOM05D007113 ORTHO05D008859 7.8e-10 67.4 91 44.0
MD12G1164000 Malus domestica HOM05D007113 ORTHO05D008859 1.3e-09 66.6 116 40.5
TWI53G1153 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 1.3e-09 66.6 63 54.0
FvH4_6g11730 Fragaria vesca HOM05D007113 ORTHO05D008859 3.0e-09 65.5 116 43.1
FAN14G1367 Fragaria x ananassa HOM05D007113 ORTHO05D008859 3.0e-09 65.5 116 43.1
Psat7g246120 Pisum sativum HOM05D007113 ORTHO05D008859 3.0e-09 65.5 84 46.4
FAN09G0121 Fragaria x ananassa HOM05D007113 ORTHO05D008859 3.9e-09 65.1 116 42.2
FAN05G2893 Fragaria x ananassa HOM05D007113 ORTHO05D008859 5.1e-09 64.7 116 42.2
Manes.08G090600 Manihot esculenta HOM05D007113 ORTHO05D008859 5.1e-09 64.7 66 48.5
HPP92_019871 Vanilla planifolia HOM05D007113 ORTHO05D008859 5.1e-09 64.7 117 35.9
Aqoxy4G02617 Aquilegia oxysepala HOM05D007113 ORTHO05D008859 6.6e-09 64.3 94 40.4
Hma1.2p1_0362F.1_g136060 Hydrangea macrophylla HOM05D007113 ORTHO05D008859 6.6e-09 64.3 106 40.6
Hund23901 Selenicereus undatus HOM05D007113 ORTHO05D008859 6.6e-09 64.3 90 47.8
Potri.016G113700 Populus trichocarpa HOM05D007113 ORTHO05D008859 1.5e-08 63.2 113 39.8
TPR.G13351 Trifolium pratense HOM05D007113 ORTHO05D008859 1.5e-08 63.2 70 47.1
RcHm_v2.0_Chr3g0463511 Rosa chinensis HOM05D007113 ORTHO05D008859 1.9e-08 62.8 116 40.5
Ca_20298_v3 Cicer arietinum L. HOM05D007113 ORTHO05D008859 2.5e-08 62.4 123 41.5
Peaxi162Scf00957g00229 Petunia axillaris HOM05D011221 ORTHO05D013370 9.6e-08 60.5 88 43.2
CiPaw.10G155700 Carya illinoinensis HOM05D007113 ORTHO05D008859 2.1e-07 59.3 62 48.4
SGA_v2.0_scaffold20G09268 Striga asiatica HOM05D007113 ORTHO05D008859 2.1e-07 59.3 83 44.6
Nitab4.5_0000802g0080 Nicotiana tabacum HOM05D007113 ORTHO05D008859 3.6e-07 58.5 104 42.3
Nitab4.5_0008493g0040 Nicotiana tabacum HOM05D007113 ORTHO05D008859 3.6e-07 58.5 105 41.0
Oeu025646.1 Olea europaea HOM05D007113 ORTHO05D008859 3.6e-07 58.5 73 43.8
Zm00001eb144250 Zea mays HOM05D007113 ORTHO05D008859 3.6e-07 58.5 104 39.4
Solyc05g052710.3 Solanum lycopersicum HOM05D007113 ORTHO05D008859 4.8e-07 58.2 73 42.5
vmacro06980 Vaccinium macrocarpon HOM05D007113 ORTHO05D008859 4.8e-07 58.2 115 39.1
Nitab4.5_0004338g0130 Nicotiana tabacum HOM05D007113 ORTHO05D008859 8.1e-07 57.4 112 38.4
arahy.Tifrunner.gnm1.ann1.C0BXE8 Arachis hypogaea HOM05D007113 ORTHO05D008859 1.1e-06 57.0 55 58.2
CAN.G503.7 Capsicum annuum HOM05D007113 ORTHO05D008859 1.1e-06 57.0 105 41.9
Sp4g20460 Schrenkiella parvula HOM05D007113 ORTHO05D008859 1.1e-06 57.0 112 40.2
CANSAT35G0395 Cannabis sativa HOM05D007113 ORTHO05D008859 1.4e-06 56.6 104 38.5
Ah.16g103370 Amaranthus hybridus HOM05D007113 ORTHO05D008859 1.8e-06 56.2 99 42.4
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 1.8e-06 56.2 86 45.3
AL4G35140 Arabidopsis lyrata HOM05D007113 ORTHO05D008859 2.4e-06 55.8 99 41.4
Carub.0004s2011 Capsella rubella HOM05D007113 ORTHO05D008859 2.4e-06 55.8 99 41.4
SGA_v2.0_scaffold78G25464 Striga asiatica HOM05D007113 ORTHO05D008859 2.4e-06 55.8 105 41.0
Sopen05g031230 Solanum pennellii HOM05D007113 ORTHO05D008859 3.1e-06 55.5 94 40.4
TAR623G1648 Trochodendron aralioides HOM05D007113 ORTHO05D008859 3.1e-06 55.5 99 40.4
EL10Ac2g04810 Beta vulgaris HOM05D007113 ORTHO05D008859 4.0e-06 55.1 94 39.4
FAN02G3283 Fragaria x ananassa HOM05D008730 ORTHO05D008859 6.9e-06 54.3 59 44.1
Thhalv10017376m.g Eutrema salsugineum HOM05D007113 ORTHO05D008859 9.0e-06 53.9 122 37.7


User provided reference genes

Program Settings