Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 2.4e-143 512.3 287 100.0
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 1.4e-58 230.7 215 52.6
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 4.7e-54 215.7 207 49.8
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 2.6e-41 173.3 208 41.3
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 2.2e-35 153.7 207 42.0
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 1.2e-30 137.9 229 37.1
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 3.6e-30 136.3 223 35.9
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 1.0e-29 134.8 225 34.7
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 1.8e-29 134.0 224 34.4
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.8e-29 134.0 232 34.5
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 1.8e-29 134.0 232 36.2
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 2.3e-29 133.7 232 37.9
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 3.0e-29 133.3 234 35.0
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 5.2e-29 132.5 226 35.4
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 5.2e-29 132.5 229 36.7
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 6.8e-29 132.1 240 34.2
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 6.8e-29 132.1 239 34.3
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 8.8e-29 131.7 228 35.1
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 1.2e-28 131.3 226 34.5
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 1.5e-28 131.0 234 33.3
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 1.5e-28 131.0 223 35.9
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 2.0e-28 130.6 242 34.7
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 2.6e-28 130.2 225 34.2
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 2.6e-28 130.2 231 34.6
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 3.4e-28 129.8 241 34.0
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 3.4e-28 129.8 234 35.9
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 4.4e-28 129.4 228 35.1
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 4.4e-28 129.4 244 34.0
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 4.4e-28 129.4 221 34.8
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 4.4e-28 129.4 231 34.2
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 5.7e-28 129.0 239 34.3
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 5.7e-28 129.0 240 33.8
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 5.7e-28 129.0 236 35.2
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 7.5e-28 128.6 228 35.1
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 7.5e-28 128.6 233 33.9
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 7.5e-28 128.6 232 35.3
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 7.5e-28 128.6 231 35.5
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 9.8e-28 128.3 240 34.6
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 1.3e-27 127.9 240 33.8
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.7e-27 127.5 258 33.7
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.7e-27 127.5 226 35.4
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 1.7e-27 127.5 239 34.3
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.7e-27 127.5 241 33.6
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 2.2e-27 127.1 240 33.3
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 2.2e-27 127.1 223 35.0
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 3.7e-27 126.3 234 34.6
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 3.7e-27 126.3 235 33.2
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 4.8e-27 125.9 241 33.2
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 4.8e-27 125.9 224 35.7
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 4.8e-27 125.9 241 33.2
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 4.8e-27 125.9 232 34.1
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 6.3e-27 125.6 239 33.5
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 6.3e-27 125.6 239 33.1
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 6.3e-27 125.6 241 33.2
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 8.3e-27 125.2 234 33.3
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 8.3e-27 125.2 231 32.9
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 8.3e-27 125.2 236 33.5
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 8.3e-27 125.2 237 32.9
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 1.1e-26 124.8 230 33.0
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 1.1e-26 124.8 233 34.3
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 1.4e-26 124.4 237 35.0
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 1.4e-26 124.4 220 34.5
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.8e-26 124.0 231 32.9
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.4e-26 123.6 227 34.4
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 2.4e-26 123.6 230 33.0
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 2.4e-26 123.6 229 33.6
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 2.4e-26 123.6 238 33.6
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 3.1e-26 123.2 240 32.9
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 4.1e-26 122.9 224 35.7
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 4.1e-26 122.9 235 32.8
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 4.1e-26 122.9 232 34.1
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 5.4e-26 122.5 251 32.7
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 5.4e-26 122.5 228 33.8
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 7.0e-26 122.1 241 31.1
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 7.0e-26 122.1 232 32.3
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 7.0e-26 122.1 227 33.0
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 1.2e-25 121.3 234 34.2
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 1.2e-25 121.3 258 31.4
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 1.6e-25 120.9 234 34.2
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 1.6e-25 120.9 221 33.0
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 2.7e-25 120.2 246 31.3
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 4.5e-25 119.4 242 32.2
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 5.9e-25 119.0 242 32.2
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 7.7e-25 118.6 254 31.5
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 1.7e-24 117.5 251 31.9
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 2.3e-24 117.1 240 30.8
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 2.9e-24 116.7 243 32.9
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 2.9e-24 116.7 247 33.6
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 5.0e-24 115.9 243 32.9
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 5.0e-24 115.9 235 31.9
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 1.1e-23 114.8 259 30.9
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 1.9e-23 114.0 190 35.8
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 1.9e-23 114.0 201 34.8
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 7.2e-23 112.1 239 33.1
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 9.5e-23 111.7 181 38.1
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 1.6e-22 110.9 138 40.6
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.6e-22 110.9 252 31.0
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 1.4e-21 107.8 251 30.3
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 5.2e-21 105.9 222 32.0
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 3.4e-20 103.2 238 31.9
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 4.4e-20 102.8 176 34.7
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.3e-19 101.3 234 31.2
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.4e-18 97.8 219 28.8
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 1.4e-18 97.8 236 30.5
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 2.7e-17 93.6 225 27.6
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 4.5e-17 92.8 271 29.9
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 7.8e-17 92.0 220 27.7
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 8.6e-16 88.6 225 27.6
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 8.6e-16 88.6 224 32.1
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 3.3e-15 86.7 343 23.6
MCO13G225 Micromonas commoda HOM05D005295 ORTHO05D005962 4.3e-15 86.3 220 31.4
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 4.3e-15 86.3 218 28.0
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 1.8e-13 80.9 227 28.6
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 1.8e-13 80.9 227 28.6
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 6.8e-13 79.0 150 30.7
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 6.8e-13 79.0 150 36.0
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 4.4e-12 76.3 153 30.1
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.3e-11 74.7 150 29.3
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 1.3e-11 74.7 150 29.3
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 2.4e-10 70.5 129 35.7
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 3.2e-10 70.1 137 33.6
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 2.7e-09 67.0 126 35.7
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 6.0e-09 65.9 126 35.7
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 6.0e-09 65.9 126 35.7
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 1.7e-08 64.3 126 35.7
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 1.7e-08 64.3 126 35.7
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 5.0e-08 62.8 147 30.6
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 5.6e-07 59.3 220 28.6
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 1.6e-06 57.8 159 26.4
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 3.6e-06 56.6 122 27.9


User provided reference genes

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