Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.3e-125 452.2 225 100.0
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.7e-94 348.2 225 77.3
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 2.3e-64 249.6 207 63.3
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 7.6e-60 234.6 180 62.8
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 7.9e-57 224.6 158 72.2
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.8e-53 213.4 213 54.5
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 2.4e-50 203.0 231 50.6
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 2.4e-50 203.0 123 77.2
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 3.9e-48 195.7 224 47.3
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 8.1e-46 188.0 226 47.3
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 8.1e-46 188.0 226 47.3
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.4e-45 187.2 216 46.8
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.4e-45 186.4 227 46.3
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 3.1e-45 186.0 223 46.6
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.0e-45 185.7 227 45.8
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 9.0e-45 184.5 163 52.8
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.2e-44 184.1 176 51.7
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.5e-44 183.7 227 45.4
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.5e-44 183.7 222 46.4
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.5e-44 183.7 219 47.9
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 2.0e-44 183.3 226 45.6
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.0e-44 183.3 134 62.7
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 2.6e-44 183.0 231 47.2
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 3.4e-44 182.6 226 46.9
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 4.5e-44 182.2 227 47.1
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 5.8e-44 181.8 222 46.4
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 7.6e-44 181.4 223 45.7
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 1.0e-43 181.0 226 45.1
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.3e-43 180.6 229 45.0
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.7e-43 180.3 226 45.1
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.7e-43 180.3 223 45.3
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.7e-43 180.3 217 44.2
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.7e-43 180.3 218 48.6
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.2e-43 179.9 129 63.6
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 2.9e-43 179.5 224 46.0
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 3.8e-43 179.1 220 45.0
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 4.9e-43 178.7 131 61.1
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 8.4e-43 177.9 226 44.2
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 8.4e-43 177.9 226 46.0
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 8.4e-43 177.9 216 47.2
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 8.4e-43 177.9 128 65.6
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.1e-42 177.6 216 47.2
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.1e-42 177.6 226 44.7
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.4e-42 177.2 131 59.5
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.4e-42 177.2 224 46.0
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.9e-42 176.8 226 43.8
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 2.5e-42 176.4 227 44.5
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 2.5e-42 176.4 232 46.6
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.5e-42 176.4 216 47.2
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.2e-42 176.0 231 43.3
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 3.2e-42 176.0 227 44.5
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 4.2e-42 175.6 173 49.1
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 4.2e-42 175.6 219 46.6
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.2e-42 175.6 219 46.6
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 4.2e-42 175.6 234 44.9
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 4.2e-42 175.6 129 62.0
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 4.2e-42 175.6 108 75.9
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.5e-42 175.3 222 45.0
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 5.5e-42 175.3 128 60.9
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 5.5e-42 175.3 220 45.9
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 7.1e-42 174.9 229 45.0
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 7.1e-42 174.9 217 46.5
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.2e-41 174.1 217 46.1
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.2e-41 174.1 214 46.7
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.6e-41 173.7 122 65.6
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.1e-41 173.3 221 47.1
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.1e-41 173.3 219 46.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 2.1e-41 173.3 129 61.2
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 2.1e-41 173.3 228 46.5
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 2.7e-41 172.9 227 45.8
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 2.7e-41 172.9 122 65.6
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 2.7e-41 172.9 123 64.2
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 4.6e-41 172.2 220 45.5
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 4.6e-41 172.2 220 46.4
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 4.6e-41 172.2 217 46.1
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 6.0e-41 171.8 216 45.8
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 6.0e-41 171.8 211 46.9
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 6.0e-41 171.8 220 43.6
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 7.9e-41 171.4 219 45.7
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 7.9e-41 171.4 216 44.4
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 7.9e-41 171.4 128 60.2
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 7.9e-41 171.4 216 44.4
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.3e-40 170.6 222 41.9
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.3e-40 170.6 221 45.7
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.8e-40 170.2 216 44.9
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.3e-40 169.9 136 58.8
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 2.3e-40 169.9 128 60.9
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.3e-40 169.9 226 42.9
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 6.7e-40 168.3 128 61.7
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 6.7e-40 168.3 217 43.3
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 8.7e-40 167.9 230 43.0
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 8.7e-40 167.9 229 43.2
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.1e-39 167.5 221 45.2
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.1e-39 167.5 128 60.2
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.5e-39 167.2 223 43.9
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.9e-39 166.8 182 47.8
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.9e-39 166.8 128 58.6
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 2.5e-39 166.4 178 47.8
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 2.5e-39 166.4 178 47.8
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 2.5e-39 166.4 178 47.8
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 2.5e-39 166.4 178 47.8
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 2.5e-39 166.4 129 60.5
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 3.3e-39 166.0 128 60.9
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 4.3e-39 165.6 123 61.8
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 5.7e-39 165.2 217 43.8
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 5.7e-39 165.2 151 51.0
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 5.7e-39 165.2 223 44.4
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 7.4e-39 164.9 177 48.0
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 7.4e-39 164.9 130 59.2
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 9.6e-39 164.5 122 60.7
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 9.6e-39 164.5 128 59.4
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 9.6e-39 164.5 128 59.4
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.6e-38 163.7 150 50.7
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.1e-38 163.3 218 43.1
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 2.8e-38 162.9 151 50.3
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 2.8e-38 162.9 217 41.9
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 2.8e-38 162.9 219 42.5
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.7e-38 162.5 219 42.5
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 6.3e-38 161.8 123 60.2
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 6.3e-38 161.8 131 55.0
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 8.2e-38 161.4 123 56.1
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 8.2e-38 161.4 123 60.2
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.4e-37 160.6 194 42.8
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.4e-37 160.6 128 57.8
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.8e-37 160.2 128 56.2
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.8e-37 160.2 129 58.1
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 2.4e-37 159.8 128 57.8
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 3.1e-37 159.5 128 58.6
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.3e-37 158.7 221 42.1
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 6.9e-37 158.3 226 41.2
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 9.0e-37 157.9 126 54.8
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.2e-36 157.5 192 44.3
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.2e-36 157.5 128 54.7
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.2e-36 157.5 183 46.4
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.2e-36 157.5 126 57.1
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 3.4e-36 156.0 126 58.7
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.9e-36 155.2 225 41.8
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.0e-35 154.5 123 56.9
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.0e-35 154.5 123 56.9
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.3e-35 154.1 152 50.7
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 2.2e-35 153.3 134 55.2
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 3.8e-35 152.5 136 54.4
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.8e-35 152.5 225 41.3
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.4e-34 150.6 126 52.4
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.9e-34 150.2 126 53.2
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 2.5e-34 149.8 145 51.0
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 3.5e-33 146.0 110 60.9
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 3.5e-33 146.0 239 38.1
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 7.9e-33 144.8 248 36.7
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 5.1e-32 142.1 127 55.1
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.1e-31 141.0 167 43.1
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 4.3e-31 139.0 220 39.1
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.7e-30 136.0 189 43.4
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.7e-30 136.0 170 41.8
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 6.3e-30 135.2 109 56.0
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 8.2e-30 134.8 194 41.2
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 8.2e-30 134.8 226 36.3
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.1e-29 132.5 192 42.2
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.3e-29 132.1 219 37.4
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 6.9e-29 131.7 218 35.3
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 9.0e-29 131.3 222 39.6
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 3.4e-28 129.4 226 37.2
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 2.2e-27 126.7 215 37.2
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.1e-26 124.4 128 51.6
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.2e-25 120.9 131 47.3
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.0e-24 117.9 124 47.6
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 8.2e-22 108.2 84 64.3
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 1.8e-21 107.1 128 45.3
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.3e-19 100.9 76 64.5
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.9e-19 99.8 210 37.1
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.4e-18 97.4 69 60.9
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 7.9e-17 91.7 182 30.8
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 7.9e-17 91.7 224 35.3
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 7.9e-17 91.7 224 35.3
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.2e-11 73.6 59 57.6
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 8.5e-11 71.6 217 29.0
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 3.0e-08 63.2 52 57.7
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 2.0e-07 60.5 48 54.2


User provided reference genes

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