Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 0.0e+00 1248.4 654 100.0
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 0.0e+00 1078.2 649 85.8
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 4.9e-208 728.4 648 61.6
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 3.1e-186 656.0 645 58.4
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 1.6e-179 633.6 647 54.3
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 3.1e-178 629.4 642 54.4
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 4.8e-155 552.4 646 47.7
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 4.3e-148 529.3 652 44.6
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.3e-148 529.3 644 46.4
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 5.7e-148 528.9 657 45.8
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 4.1e-146 522.7 651 46.4
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 1.0e-144 518.1 635 46.5
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 2.9e-144 516.5 646 46.0
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.8e-141 507.3 617 46.0
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 2.3e-141 506.9 659 44.3
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 3.0e-141 506.5 653 45.5
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.5e-140 503.4 655 45.3
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 7.4e-140 501.9 656 44.8
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 4.8e-139 499.2 652 43.4
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 5.3e-138 495.7 649 43.5
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 4.5e-137 492.7 636 43.9
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 7.7e-137 491.9 643 44.2
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.2e-136 490.3 648 44.1
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 3.8e-136 489.6 657 43.8
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 5.0e-136 489.2 643 44.0
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 5.0e-136 489.2 650 43.2
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 6.5e-136 488.8 657 44.0
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 8.5e-136 488.4 649 43.6
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 8.5e-136 488.4 652 43.6
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-135 488.0 643 44.0
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.1e-135 488.0 682 41.9
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.9e-135 487.3 640 43.1
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 2.5e-135 486.9 645 42.0
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 2.5e-135 486.9 648 43.7
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 3.2e-135 486.5 650 43.1
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 4.2e-135 486.1 645 42.2
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 4.2e-135 486.1 651 44.1
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 9.4e-135 485.0 652 43.6
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 2.7e-134 483.4 682 41.6
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 2.7e-134 483.4 651 43.9
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 3.6e-134 483.0 652 42.8
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 4.7e-134 482.6 656 43.4
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 4.7e-134 482.6 642 44.1
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.8e-133 480.7 654 43.4
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 5.1e-133 479.2 651 42.5
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 6.7e-133 478.8 643 42.6
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 8.8e-133 478.4 661 44.5
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.0e-132 477.2 657 42.8
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 2.6e-132 476.9 655 44.3
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 3.3e-132 476.5 645 42.3
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 3.3e-132 476.5 651 43.0
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 7.4e-132 475.3 644 42.7
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 7.4e-132 475.3 661 42.8
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 2.2e-131 473.8 652 41.9
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 2.8e-131 473.4 632 42.7
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 3.7e-131 473.0 648 41.0
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 4.8e-131 472.6 635 43.3
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 6.3e-131 472.2 639 43.2
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.1e-130 471.5 643 43.1
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 5.3e-130 469.2 635 42.8
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 5.3e-130 469.2 638 42.9
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 9.1e-130 468.4 647 42.5
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.1e-130 468.4 651 43.0
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.2e-129 468.0 645 42.0
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.6e-129 466.8 641 42.6
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 5.9e-129 465.7 643 42.6
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 5.9e-129 465.7 639 42.9
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 5.9e-129 465.7 644 42.9
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 7.7e-129 465.3 639 42.9
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 1.0e-128 464.9 647 41.9
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 1.0e-128 464.9 635 42.8
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 1.0e-128 464.9 654 42.4
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.0e-128 464.9 661 40.7
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.9e-128 463.4 697 40.6
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 3.8e-128 463.0 633 42.8
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 8.5e-128 461.8 639 42.4
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 8.5e-128 461.8 651 42.4
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.1e-127 461.5 656 42.1
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 1.4e-127 461.1 635 42.7
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 1.4e-127 461.1 635 42.7
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.4e-127 461.1 656 42.5
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-127 460.7 650 41.5
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 3.2e-127 459.9 650 41.5
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 3.2e-127 459.9 633 42.7
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 4.2e-127 459.5 643 41.5
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 5.5e-127 459.1 644 41.9
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 5.5e-127 459.1 644 40.5
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 7.2e-127 458.8 666 41.4
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 2.1e-126 457.2 659 42.3
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 2.1e-126 457.2 667 41.2
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 3.6e-126 456.4 639 42.3
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 4.7e-126 456.1 639 42.1
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.8e-125 454.1 648 41.4
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.5e-124 451.1 639 42.4
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 9.7e-124 448.4 652 41.4
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.7e-123 447.6 673 38.6
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-122 444.9 667 40.8
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 7.0e-122 442.2 620 41.1
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 7.0e-122 442.2 620 40.6
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 4.5e-121 439.5 661 39.0
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-119 434.5 593 42.3
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 2.1e-118 430.6 642 39.6
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 2.7e-118 430.3 652 39.9
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 3.6e-118 429.9 643 39.3
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 2.6e-116 423.7 567 44.3
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 5.9e-113 412.5 537 43.8
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.2e-111 406.8 645 38.3
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 6.8e-109 399.1 565 43.0
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 3.1e-106 390.2 565 41.2
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 2.0e-105 387.5 648 39.4
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.3e-103 380.2 538 40.3
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.4e-101 374.8 538 40.5
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.4e-101 374.8 621 37.8
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 2.6e-100 370.5 524 41.4
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 3.7e-99 366.7 603 39.5
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 2.3e-96 357.5 430 50.0
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 1.6e-89 334.7 506 39.7
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 8.3e-83 312.4 401 43.6
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.4e-77 295.0 406 43.3
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 7.6e-68 262.7 434 37.8
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.0e-64 252.3 387 38.5
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.8e-54 217.6 215 54.0
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 7.4e-47 193.0 396 35.9
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.1e-41 174.9 236 44.1
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 7.4e-39 166.4 194 49.0
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 3.1e-37 161.0 631 28.1
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 6.9e-37 159.8 244 39.8
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.9e-34 151.8 409 28.4
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.1e-33 148.3 218 39.9
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 5.1e-32 143.7 417 30.7
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 1.7e-27 128.6 394 29.4
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 3.8e-27 127.5 119 60.5
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 6.7e-24 116.7 317 32.8
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-23 115.5 218 33.0
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 5.7e-23 113.6 169 39.6
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 2.8e-22 111.3 249 30.1
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 3.1e-21 107.8 255 33.3
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.9e-21 106.7 134 46.3
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 4.2e-18 97.4 247 30.4
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 6.7e-16 90.1 182 33.0
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 7.7e-12 76.6 105 40.0
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 2.2e-11 75.1 98 45.9
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.1e-10 72.8 241 26.1
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.2e-10 70.1 134 35.8
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 6.1e-09 67.0 60 60.0
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 1.0e-08 66.2 100 37.0
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-08 64.7 132 36.4
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.7e-08 63.5 136 34.6
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 8.8e-08 63.2 102 38.2
TPR.G1639 Trifolium pratense HOM05D000768 ORTHO05D000665 8.8e-08 63.2 310 22.6
Aa31LG7G1100 Aethionema arabicum HOM05D000768 ORTHO05D001828 2.0e-07 62.0 237 23.2
Lsat_1_v5_gn_1_114900 Lactuca sativa HOM05D000768 ORTHO05D000665 3.3e-07 61.2 275 24.0
AL1G12060 Arabidopsis lyrata HOM05D000768 ORTHO05D000665 4.4e-07 60.8 215 25.1
Psat0s2521g0080 Pisum sativum HOM05D000768 ORTHO05D000665 5.7e-07 60.5 237 24.5
AT1G02690 Arabidopsis thaliana HOM05D000768 ORTHO05D000665 7.4e-07 60.1 215 24.7
Lsat_1_v5_gn_7_75721 Lactuca sativa HOM05D000768 ORTHO05D000665 7.4e-07 60.1 275 24.0
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.3e-06 59.3 80 43.8
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 2.2e-06 58.5 90 36.7
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 2.8e-06 58.2 142 33.8
Lsat_1_v5_gn_4_106401 Lactuca sativa HOM05D000768 ORTHO05D000665 4.8e-06 57.4 202 26.2
PSO170G3835 Papaver somniferum HOM05D000768 ORTHO05D000665 8.2e-06 56.6 237 24.1


User provided reference genes

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