Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 0.0e+00 1951.8 998 100.0
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 1.2e-255 887.1 1027 51.8
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.5e-203 713.4 802 52.2
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.5e-203 713.4 802 52.2
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 7.2e-195 685.3 825 49.6
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 4.4e-144 516.5 860 41.9
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 2.2e-135 487.6 868 40.4
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.0e-132 478.8 694 43.1
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 1.8e-129 468.0 699 42.2
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 6.9e-129 466.1 695 41.6
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 2.1e-122 444.5 690 41.6
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 3.7e-122 443.7 692 40.2
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 2.0e-120 438.0 690 41.4
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 2.9e-119 434.1 684 40.1
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.8e-119 433.7 684 40.2
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 5.5e-118 429.9 689 39.3
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 1.2e-117 428.7 699 39.3
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.3e-116 425.2 685 39.9
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 5.1e-116 423.3 685 39.7
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 8.7e-116 422.5 698 39.3
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 3.3e-115 420.6 687 38.7
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 4.3e-115 420.2 699 38.8
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.6e-114 418.3 718 38.0
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 9.0e-113 412.5 687 38.6
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.0e-112 411.4 685 38.8
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 3.4e-112 410.6 685 38.8
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 4.5e-112 410.2 707 38.5
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 2.2e-111 407.9 744 36.3
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 4.9e-111 406.8 685 38.5
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 5.5e-110 403.3 682 37.8
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 7.1e-110 402.9 690 37.4
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 9.3e-110 402.5 692 37.4
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 9.3e-110 402.5 689 38.2
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.6e-109 401.7 767 35.5
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 1.3e-108 398.7 684 38.0
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 1.3e-108 398.7 684 37.1
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 5.1e-108 396.7 690 37.5
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 6.7e-108 396.4 692 37.0
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 3.3e-107 394.0 690 36.7
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 7.4e-107 392.9 685 37.4
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 1.3e-106 392.1 774 35.3
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.6e-106 391.7 702 36.0
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 3.7e-106 390.6 694 37.3
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 6.3e-106 389.8 685 37.1
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.4e-105 388.7 693 37.8
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.8e-105 388.3 767 35.5
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 1.8e-105 388.3 696 36.9
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 6.9e-105 386.3 687 36.1
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 6.9e-105 386.3 691 37.8
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.5e-104 385.2 693 37.2
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 2.0e-104 384.8 689 37.0
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 3.4e-104 384.0 677 36.6
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 5.9e-104 383.3 696 37.2
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 5.9e-104 383.3 685 37.1
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.3e-103 382.1 727 35.5
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 1.9e-102 378.3 686 35.9
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 1.9e-102 378.3 676 37.0
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 3.2e-102 377.5 694 37.0
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.2e-101 375.6 696 37.5
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 1.6e-101 375.2 691 35.6
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 1.6e-101 375.2 684 35.7
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.6e-101 375.2 707 35.2
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.6e-101 375.2 693 37.1
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 4.6e-101 373.6 684 37.0
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.8e-100 371.7 571 41.0
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 5.1e-100 370.2 735 35.2
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 5.1e-100 370.2 687 35.4
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 6.7e-100 369.8 685 36.4
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 1.1e-99 369.0 691 35.0
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 1.5e-99 368.6 695 35.5
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 2.0e-99 368.2 690 35.1
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 4.3e-99 367.1 698 35.5
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 1.7e-98 365.2 697 35.0
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 2.8e-98 364.4 686 35.0
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 3.7e-98 364.0 805 34.0
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 4.8e-98 363.6 610 38.4
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 6.3e-98 363.2 695 35.5
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 8.2e-98 362.8 695 36.7
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 1.1e-97 362.5 690 36.1
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 1.4e-97 362.1 691 34.7
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 4.1e-97 360.5 691 35.6
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 5.3e-97 360.1 691 35.3
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 6.9e-97 359.8 691 34.6
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 9.1e-97 359.4 691 34.4
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 9.1e-97 359.4 696 35.2
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 7.7e-96 356.3 687 37.7
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.0e-95 355.9 689 34.8
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 1.7e-95 355.1 757 33.4
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 2.9e-95 354.4 691 34.2
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 2.9e-95 354.4 691 35.3
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 3.8e-95 354.0 691 35.3
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 6.5e-95 353.2 691 35.3
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 1.4e-94 352.1 690 35.4
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.4e-94 352.1 691 35.3
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 3.2e-94 350.9 697 34.7
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 3.2e-94 350.9 690 35.4
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 3.2e-94 350.9 690 35.2
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 5.5e-94 350.1 684 34.5
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 3.6e-93 347.4 665 34.9
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 4.7e-93 347.1 752 33.8
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 4.7e-93 347.1 603 39.0
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 1.8e-92 345.1 691 35.5
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 3.3e-91 340.9 692 35.8
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 7.4e-91 339.7 699 33.9
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 2.8e-90 337.8 734 33.9
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 3.1e-89 334.3 699 34.6
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 1.7e-87 328.6 740 33.6
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 8.5e-87 326.2 537 40.0
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 5.2e-84 317.0 684 32.9
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 8.8e-84 316.2 709 31.9
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 8.2e-82 309.7 645 34.7
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 2.2e-79 301.6 374 49.7
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 1.5e-75 288.9 554 36.8
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 2.7e-69 268.1 700 29.9
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 4.7e-69 267.3 635 34.6
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.8e-65 255.4 485 36.5
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.8e-65 255.4 485 36.5
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 1.6e-64 252.3 371 39.6
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.1e-62 246.1 676 30.3
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 4.2e-62 244.2 676 30.2
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 3.4e-59 234.6 422 38.9
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 2.0e-56 225.3 501 35.7
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.0e-55 223.0 416 37.3
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.0e-55 223.0 416 37.3
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 2.9e-55 221.5 518 34.4
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.6e-54 217.2 457 34.6
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 3.4e-51 208.0 450 36.2
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 7.5e-51 206.8 523 30.8
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.9e-49 202.2 470 35.7
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 3.9e-47 194.5 346 39.6
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 9.5e-46 189.9 289 35.3
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.8e-44 185.7 200 51.5
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.0e-39 169.9 358 31.0
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 2.3e-36 158.7 258 34.9
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 6.8e-36 157.1 132 57.6
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 8.9e-36 156.8 270 41.5
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.5e-30 138.7 406 31.0
MCO15G512 Micromonas commoda HOM05D003594 ORTHO05D004268 2.8e-29 135.2 637 27.3
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 4.0e-28 131.3 292 35.6
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 4.2e-25 121.3 148 39.9
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 1.2e-24 119.8 156 38.5
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 6.0e-24 117.5 217 32.7
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.0e-23 116.7 286 36.4
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.3e-23 116.3 199 32.7
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 8.7e-23 113.6 429 28.7
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.6e-22 110.9 154 40.3
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 1.3e-21 109.8 133 50.4
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 5.3e-20 104.4 122 50.8
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 9.0e-20 103.6 141 46.1
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 5.8e-19 100.9 116 52.6
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 7.6e-19 100.5 122 39.3
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 3.8e-18 98.2 131 48.1
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 2.4e-17 95.5 128 39.1
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 9.3e-17 93.6 106 41.5
Cre01.g057061 Chlamydomonas reinhardtii HOM05D003594 ORTHO05D004268 1.2e-16 93.2 689 24.2
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 1.6e-16 92.8 106 40.6
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.5e-14 86.3 121 39.7
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 1.3e-13 83.2 116 37.1
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 4.8e-13 81.3 234 27.8
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.3e-12 77.8 62 62.9
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 3.4e-11 75.1 163 30.7
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 3.4e-11 75.1 242 28.9
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 7.6e-11 73.9 83 41.0
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 9.9e-11 73.6 132 34.1
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 1.1e-09 70.1 83 39.8
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 1.1e-09 70.1 83 39.8
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 5.4e-09 67.8 77 40.3
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 7.1e-09 67.4 83 38.6
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-08 66.6 89 33.7
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 1.6e-08 66.2 77 39.0
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 7.9e-08 63.9 62 58.1
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.3e-07 63.2 196 33.2
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 8.7e-07 60.5 123 34.1
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 3.3e-06 58.5 62 46.8
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 7.4e-06 57.4 112 35.7


User provided reference genes

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