Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 2.2e-82 308.9 159 100.0
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 7.6e-30 134.4 96 70.8
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 1.4e-28 130.2 96 68.8
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 3.2e-28 129.0 91 75.8
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 5.4e-28 128.3 92 72.8
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.6e-27 126.7 123 59.3
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 1.6e-27 126.7 96 67.7
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 2.1e-27 126.3 84 67.9
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 6.0e-27 124.8 139 51.8
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 1.3e-26 123.6 124 52.4
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 5.1e-26 121.7 92 65.2
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 5.1e-26 121.7 91 70.3
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 8.6e-26 120.9 131 54.2
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.9e-25 119.8 79 72.2
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 4.3e-25 118.6 158 49.4
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 5.6e-25 118.2 97 62.9
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 7.3e-25 117.9 151 49.0
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 9.6e-25 117.5 91 68.1
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 1.2e-24 117.1 112 58.9
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 1.2e-24 117.1 131 53.4
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 2.1e-24 116.3 131 55.0
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.1e-24 116.3 91 67.0
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 2.8e-24 115.9 96 64.6
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.8e-24 115.9 77 68.8
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 2.8e-24 115.9 149 51.0
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 4.7e-24 115.2 104 58.7
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 4.7e-24 115.2 137 48.2
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 1.1e-23 114.0 91 64.8
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 1.8e-23 113.2 84 66.7
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 4.0e-23 112.1 104 62.5
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 4.0e-23 112.1 136 50.0
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 5.2e-23 111.7 130 49.2
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 5.2e-23 111.7 156 46.8
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 1.2e-22 110.5 73 68.5
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.2e-22 110.5 139 45.3
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.5e-22 110.2 90 62.2
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 2.0e-22 109.8 83 63.9
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 2.0e-22 109.8 131 48.9
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.6e-22 109.4 73 69.9
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 4.4e-22 108.6 73 72.6
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 9.9e-22 107.5 72 69.4
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.3e-21 107.1 77 62.3
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.7e-21 106.7 103 61.2
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 1.7e-21 106.7 98 63.3
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 1.7e-21 106.7 138 48.6
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 1.7e-21 106.7 90 65.6
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 2.2e-21 106.3 109 57.8
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 2.2e-21 106.3 98 62.2
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 2.2e-21 106.3 91 64.8
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 2.2e-21 106.3 115 54.8
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 2.9e-21 105.9 113 55.8
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 2.9e-21 105.9 114 50.0
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 2.9e-21 105.9 161 44.7
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 2.9e-21 105.9 161 44.7
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 2.9e-21 105.9 98 62.2
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 4.9e-21 105.1 104 61.5
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 6.4e-21 104.8 105 55.2
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 8.4e-21 104.4 105 57.1
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 8.4e-21 104.4 91 65.9
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 1.1e-20 104.0 90 64.4
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 1.1e-20 104.0 126 47.6
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 1.1e-20 104.0 118 53.4
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 2.4e-20 102.8 75 65.3
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 2.4e-20 102.8 125 52.8
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.4e-20 102.8 91 58.2
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.4e-20 102.8 78 64.1
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 2.4e-20 102.8 115 54.8
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 4.2e-20 102.1 97 60.8
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 4.2e-20 102.1 125 52.8
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 5.4e-20 101.7 72 68.1
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 5.4e-20 101.7 112 54.5
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 5.4e-20 101.7 97 55.7
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 7.1e-20 101.3 139 47.5
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 7.1e-20 101.3 112 53.6
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 7.1e-20 101.3 84 59.5
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.2e-19 100.5 125 52.0
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 1.2e-19 100.5 124 51.6
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 1.6e-19 100.1 127 47.2
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 1.6e-19 100.1 87 60.9
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 2.1e-19 99.8 91 62.6
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.1e-19 99.8 91 59.3
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 2.1e-19 99.8 133 50.4
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 2.7e-19 99.4 91 64.8
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 2.7e-19 99.4 97 56.7
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 2.7e-19 99.4 135 45.2
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 3.5e-19 99.0 89 60.7
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 3.5e-19 99.0 91 61.5
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 3.5e-19 99.0 90 57.8
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 4.6e-19 98.6 91 60.4
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 4.6e-19 98.6 83 59.0
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 6.0e-19 98.2 76 59.2
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 6.0e-19 98.2 76 59.2
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 6.0e-19 98.2 76 59.2
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 6.0e-19 98.2 76 59.2
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 6.0e-19 98.2 127 44.9
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 7.8e-19 97.8 74 63.5
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 7.8e-19 97.8 91 61.5
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 1.0e-18 97.4 126 49.2
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 1.3e-18 97.1 91 60.4
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.7e-18 96.7 148 44.6
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 1.7e-18 96.7 82 59.8
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 2.3e-18 96.3 90 62.2
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 3.9e-18 95.5 91 59.3
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 5.1e-18 95.1 74 66.2
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 5.1e-18 95.1 89 57.3
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 5.1e-18 95.1 69 65.2
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 5.1e-18 95.1 98 56.1
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 6.6e-18 94.7 116 50.9
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 6.6e-18 94.7 100 53.0
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 8.7e-18 94.4 90 54.4
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.3e-17 92.4 79 60.8
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 9.6e-17 90.9 121 50.4
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 3.6e-16 89.0 80 52.5
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 3.6e-16 89.0 60 71.7
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 1.1e-15 87.4 94 51.1
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 1.8e-15 86.7 135 45.2
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 2.4e-15 86.3 108 44.4
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 3.1e-15 85.9 106 41.5
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 1.2e-14 84.0 139 41.7
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 5.8e-14 81.6 91 49.5
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.2e-12 75.9 125 39.2
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 4.2e-12 75.5 79 54.4
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 4.2e-12 75.5 79 54.4
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 7.1e-12 74.7 125 38.4
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 2.3e-10 69.7 68 51.5
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 1.5e-09 67.0 65 50.8
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 2.1e-08 63.2 64 48.4
AagrBONN_evm.TU.Sc2ySwM_228.2739 Anthoceros agrestis HOM05D005516 ORTHO05D006713 3.6e-08 62.4 59 50.8
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 1.4e-07 60.5 59 49.2
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 3.1e-07 59.3 59 50.8
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 6.9e-07 58.2 102 37.3


User provided reference genes

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