Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 9.6e-169 596.7 285 100.0
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 8.9e-82 307.8 171 87.1
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 2.1e-70 270.0 244 57.8
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 4.6e-38 162.5 221 41.6
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.0e-37 161.4 221 43.4
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 2.5e-36 156.8 238 37.4
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 2.5e-36 156.8 231 42.0
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 3.3e-36 156.4 191 44.5
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.7e-36 155.6 228 38.6
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 5.7e-36 155.6 203 42.9
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 5.7e-36 155.6 229 41.5
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 7.4e-36 155.2 228 38.6
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.7e-35 154.1 216 42.1
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 2.8e-35 153.3 231 39.8
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 6.3e-35 152.1 218 41.7
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 6.3e-35 152.1 226 41.2
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 8.2e-35 151.8 186 44.1
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 8.2e-35 151.8 186 44.1
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 8.2e-35 151.8 234 38.5
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 8.2e-35 151.8 222 39.6
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 8.2e-35 151.8 228 40.8
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 8.2e-35 151.8 192 42.7
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 1.4e-34 151.0 215 40.9
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-34 150.6 223 39.9
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 2.4e-34 150.2 177 49.7
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.4e-34 150.2 194 43.3
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 2.4e-34 150.2 234 38.9
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.4e-34 150.2 217 41.0
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 3.1e-34 149.8 199 43.7
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 3.1e-34 149.8 201 42.8
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.1e-34 149.4 217 40.1
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 5.3e-34 149.1 217 39.6
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 6.9e-34 148.7 229 38.9
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 6.9e-34 148.7 200 41.5
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 9.1e-34 148.3 216 40.7
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 9.1e-34 148.3 225 39.6
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 9.1e-34 148.3 208 41.8
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 9.1e-34 148.3 234 38.5
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.2e-33 147.9 221 39.4
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.2e-33 147.9 213 40.8
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.2e-33 147.9 209 41.1
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.5e-33 147.5 199 40.7
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 2.0e-33 147.1 218 40.8
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 2.6e-33 146.7 159 50.3
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 2.6e-33 146.7 206 40.3
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 3.4e-33 146.4 228 41.2
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 3.4e-33 146.4 199 43.2
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 3.4e-33 146.4 209 42.6
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 3.4e-33 146.4 209 42.6
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 3.4e-33 146.4 149 49.0
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 3.4e-33 146.4 222 40.1
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.5e-33 146.0 194 42.8
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 4.5e-33 146.0 232 38.8
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.5e-33 146.0 232 38.8
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 4.5e-33 146.0 233 39.5
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 5.9e-33 145.6 216 38.4
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 5.9e-33 145.6 228 39.9
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 5.9e-33 145.6 222 37.8
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 7.7e-33 145.2 185 44.9
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 7.7e-33 145.2 185 44.9
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.0e-32 144.8 168 44.6
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.0e-32 144.8 223 38.1
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.3e-32 144.4 232 38.8
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.3e-32 144.4 171 47.4
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.7e-32 144.1 228 40.8
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.7e-32 144.1 243 37.9
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 1.7e-32 144.1 199 41.2
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.7e-32 144.1 228 38.6
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.7e-32 144.1 185 44.3
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 2.2e-32 143.7 201 42.3
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 2.2e-32 143.7 169 42.6
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.2e-32 143.7 219 41.1
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.9e-32 143.3 169 45.0
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 2.9e-32 143.3 225 38.2
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 2.9e-32 143.3 218 39.4
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 3.8e-32 142.9 178 43.3
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 5.0e-32 142.5 167 46.1
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 6.5e-32 142.1 167 46.1
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 6.5e-32 142.1 167 46.1
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 6.5e-32 142.1 167 46.1
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 6.5e-32 142.1 226 39.8
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 6.5e-32 142.1 215 41.4
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 6.5e-32 142.1 218 41.7
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 8.5e-32 141.7 221 41.2
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 8.5e-32 141.7 236 36.9
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 8.5e-32 141.7 190 44.7
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 8.5e-32 141.7 197 41.6
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.1e-31 141.4 224 39.7
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 1.1e-31 141.4 226 39.4
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.1e-31 141.4 244 38.5
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.1e-31 141.4 170 42.9
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 1.1e-31 141.4 186 44.1
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.1e-31 141.4 219 38.8
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 1.1e-31 141.4 219 38.8
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.4e-31 141.0 173 45.7
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.4e-31 141.0 171 42.7
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 1.4e-31 141.0 169 43.8
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 2.5e-31 140.2 217 38.7
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 2.5e-31 140.2 230 35.7
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.5e-31 140.2 240 38.8
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.5e-31 140.2 154 46.1
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 3.2e-31 139.8 214 41.1
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 7.2e-31 138.7 152 45.4
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 7.2e-31 138.7 211 40.3
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 9.4e-31 138.3 171 42.1
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 9.4e-31 138.3 230 37.8
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 9.4e-31 138.3 222 39.6
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.2e-30 137.9 201 41.3
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.2e-30 137.9 182 41.8
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 1.2e-30 137.9 217 40.1
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.2e-30 137.9 239 36.0
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.2e-30 137.9 223 39.0
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.2e-30 137.9 198 38.9
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 1.6e-30 137.5 168 45.8
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.6e-30 137.5 145 46.9
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-30 137.5 243 36.2
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.6e-30 137.5 169 42.6
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 2.1e-30 137.1 170 41.8
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 2.7e-30 136.7 155 44.5
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 2.7e-30 136.7 169 44.4
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.7e-30 136.7 189 40.7
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.7e-30 136.7 159 42.1
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 2.7e-30 136.7 208 39.4
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 3.6e-30 136.3 156 46.8
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.6e-30 136.3 242 36.8
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 4.7e-30 136.0 213 40.8
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 6.1e-30 135.6 254 35.8
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 6.1e-30 135.6 175 42.9
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 6.1e-30 135.6 201 41.3
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.8e-29 134.0 220 37.3
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 2.3e-29 133.7 230 37.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 6.7e-29 132.1 155 43.9
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 6.7e-29 132.1 228 35.5
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 2.6e-28 130.2 155 46.5
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 5.7e-28 129.0 207 37.2
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 7.4e-28 128.6 175 40.0
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 9.7e-28 128.3 190 38.4
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.7e-27 127.5 135 48.9
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.7e-27 127.5 162 43.2
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.2e-27 127.1 168 43.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 3.7e-27 126.3 126 46.0
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 6.3e-27 125.6 138 47.1
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 2.4e-26 123.6 163 41.1
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.1e-26 122.9 130 45.4
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 1.5e-25 120.9 243 35.4
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 3.5e-25 119.8 219 32.9
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.7e-24 117.5 127 47.2
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 5.5e-23 112.5 208 33.2
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 1.6e-22 110.9 164 39.6
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 3.9e-21 106.3 315 27.9
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 8.2e-19 98.6 115 41.7
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.1e-18 98.2 190 34.2
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.1e-18 98.2 190 34.2
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 9.1e-18 95.1 138 41.3
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 4.0e-13 79.7 130 36.9


User provided reference genes

Program Settings