Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_6700 Physcomitrium patens HOM05D006015 ORTHO05D007816 9.2e-264 912.9 430 100.0
Pp3c12_25130 Physcomitrium patens HOM05D006015 ORTHO05D007816 1.0e-182 643.7 425 69.9
Ah.01g002640 Amaranthus hybridus HOM05D006015 ORTHO05D007816 6.6e-145 518.1 369 63.1
Sc21g0000520 Simmondsia chinensis HOM05D006015 ORTHO05D007816 6.6e-145 518.1 361 64.3
Aqoxy1G04250 Aquilegia oxysepala HOM05D006015 ORTHO05D007816 1.6e-143 513.5 357 65.0
AUR62029116 Chenopodium quinoa HOM05D006015 ORTHO05D007816 3.6e-143 512.3 366 63.9
MSTRG.6445 Avicennia marina HOM05D006015 ORTHO05D007816 1.0e-142 510.8 366 62.6
ATR0827G116 Amborella trichopoda HOM05D006015 ORTHO05D007816 3.1e-142 509.2 358 65.6
Phvul.007G239000 Phaseolus vulgaris HOM05D006015 ORTHO05D007816 5.2e-142 508.4 358 62.6
TWI75G1720 Tripterygium wilfordii HOM05D006015 ORTHO05D007816 5.2e-142 508.4 357 64.4
Ciclev10015287m.g Citrus clementina HOM05D006015 ORTHO05D007816 6.8e-142 508.1 357 64.4
FAN09G3933 Fragaria x ananassa HOM05D006015 ORTHO05D007816 6.8e-142 508.1 365 62.5
Eucgr.H00879 Eucalyptus grandis HOM05D006015 ORTHO05D007816 8.9e-142 507.7 358 62.3
VMungo0720G1520 Vigna mungo HOM05D006015 ORTHO05D007816 8.9e-142 507.7 362 62.2
MD17G1116800 Malus domestica HOM05D006015 ORTHO05D007816 1.5e-141 506.9 413 56.4
FvH4_6g40640 Fragaria vesca HOM05D006015 ORTHO05D007816 2.6e-141 506.1 365 62.2
FAN02G2834 Fragaria x ananassa HOM05D006015 ORTHO05D007816 2.6e-141 506.1 365 62.2
FAN05G5154 Fragaria x ananassa HOM05D006015 ORTHO05D007816 2.6e-141 506.1 365 62.2
FAN14G1195 Fragaria x ananassa HOM05D006015 ORTHO05D007816 3.4e-141 505.8 365 62.2
Nn3g19725 Nelumbo nucifera HOM05D006015 ORTHO05D007816 5.8e-141 505.0 357 62.7
Gohir.A11G149000 Gossypium hirsutum HOM05D006015 ORTHO05D007816 7.5e-141 504.6 357 63.6
Medtr1g046210 Medicago truncatula HOM05D006015 ORTHO05D007816 7.5e-141 504.6 357 61.9
Cfa014228 Carpinus fangiana HOM05D006015 ORTHO05D007816 9.8e-141 504.2 357 63.0
Psat6g109000 Pisum sativum HOM05D006015 ORTHO05D007816 2.2e-140 503.1 357 62.5
Thecc.01G195800 Theobroma cacao HOM05D006015 ORTHO05D007816 2.2e-140 503.1 357 63.3
Cpa.g.sc136.28 Carica papaya HOM05D006015 ORTHO05D007816 4.9e-140 501.9 357 62.5
Duzib138G1954 Durio zibethinus HOM05D006015 ORTHO05D007816 4.9e-140 501.9 358 63.7
MD09G1126500 Malus domestica HOM05D006015 ORTHO05D007816 4.9e-140 501.9 413 56.2
CiPaw.04G196900 Carya illinoinensis HOM05D006015 ORTHO05D007816 8.3e-140 501.1 357 62.5
Gorai.007G166200 Gossypium raimondii HOM05D006015 ORTHO05D007816 8.3e-140 501.1 357 63.6
Lalb_Chr01g0011281 Lupinus albus HOM05D006015 ORTHO05D007816 1.4e-139 500.4 357 62.5
THA.LOC104808847 Tarenaya hassleriana HOM05D006015 ORTHO05D007816 1.4e-139 500.4 353 64.0
COL.COLO4_33334 Corchorus olitorius HOM05D006015 ORTHO05D007816 1.9e-139 500.0 357 63.0
Manes.12G065800 Manihot esculenta HOM05D006015 ORTHO05D007816 2.4e-139 499.6 357 62.7
Migut.K00073 Erythranthe guttata HOM05D006015 ORTHO05D007816 4.1e-139 498.8 357 62.7
Glyma.10G128800 Glycine max HOM05D006015 ORTHO05D007816 4.1e-139 498.8 409 57.2
Lj6g0021297 Lotus japonicus HOM05D006015 ORTHO05D007816 4.1e-139 498.8 416 56.2
BcaB08g34500 Brassica carinata HOM05D006015 ORTHO05D007816 5.4e-139 498.4 413 55.4
TPR.G23976 Trifolium pratense HOM05D006015 ORTHO05D007816 5.4e-139 498.4 357 61.9
Gohir.D11G156100 Gossypium hirsutum HOM05D006015 ORTHO05D007816 7.0e-139 498.0 357 63.3
Gorai.001G221700 Gossypium raimondii HOM05D006015 ORTHO05D007816 9.2e-139 497.7 371 60.9
Nitab4.5_0001701g0190 Nicotiana tabacum HOM05D006015 ORTHO05D007816 9.2e-139 497.7 357 62.7
HanXRQChr11g0329021 Helianthus annuus HOM05D006015 ORTHO05D007816 1.2e-138 497.3 362 61.9
Ca_25000_v3 Cicer arietinum L. HOM05D006015 ORTHO05D007816 1.6e-138 496.9 357 62.5
Ca_30801_v3 Cicer arietinum L. HOM05D006015 ORTHO05D007816 1.6e-138 496.9 357 62.5
Duzib211G0350 Durio zibethinus HOM05D006015 ORTHO05D007816 1.6e-138 496.9 357 62.5
CsaV3_7G002510 Cucumis sativus L. HOM05D006015 ORTHO05D007816 2.0e-138 496.5 416 56.0
PGR083G2314 Punica granatum HOM05D006015 ORTHO05D007816 2.0e-138 496.5 358 62.3
TWI18G0302 Tripterygium wilfordii HOM05D006015 ORTHO05D007816 2.0e-138 496.5 357 63.6
Cc08_g02360 Coffea canephora HOM05D006015 ORTHO05D007816 2.7e-138 496.1 364 60.7
MELO3C024194.2 Cucumis melo HOM05D006015 ORTHO05D007816 2.7e-138 496.1 357 61.9
Sabra14G0127200 Salix brachista HOM05D006015 ORTHO05D007816 2.7e-138 496.1 358 62.0
DCAR_019683 Daucus carota HOM05D006015 ORTHO05D007816 4.6e-138 495.4 410 57.1
ClCG02G002870 Citrullus lanatus HOM05D006015 ORTHO05D007816 6.0e-138 495.0 417 55.6
Gohir.D07G198100 Gossypium hirsutum HOM05D006015 ORTHO05D007816 7.8e-138 494.6 371 60.6
RcHm_v2.0_Chr2g0156011 Rosa chinensis HOM05D006015 ORTHO05D007816 7.8e-138 494.6 365 60.0
Sp3g23770 Schrenkiella parvula HOM05D006015 ORTHO05D007816 7.8e-138 494.6 377 59.7
Aa31LG8G11520 Aethionema arabicum HOM05D006015 ORTHO05D007816 1.3e-137 493.8 355 62.3
Lalb_Chr03g0036841 Lupinus albus HOM05D006015 ORTHO05D007816 1.3e-137 493.8 359 61.3
Lsat_1_v5_gn_7_96920 Lactuca sativa HOM05D006015 ORTHO05D007816 1.7e-137 493.4 362 61.0
Atru.chr6.3393 Acer truncatum HOM05D006015 ORTHO05D007816 2.3e-137 493.0 357 61.6
Sopen07g024010 Solanum pennellii HOM05D006015 ORTHO05D007816 3.0e-137 492.7 357 61.9
CSS0001355 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 3.9e-137 492.3 363 61.4
CSS0036117 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 3.9e-137 492.3 363 61.4
ECA236G0403 Erigeron canadensis HOM05D006015 ORTHO05D007816 3.9e-137 492.3 413 56.7
Oeu064356.1 Olea europaea HOM05D006015 ORTHO05D007816 3.9e-137 492.3 353 62.6
Peaxi162Scf00802g00022 Petunia axillaris HOM05D006015 ORTHO05D007816 5.0e-137 491.9 418 56.5
vmacro12084 Vaccinium macrocarpon HOM05D006015 ORTHO05D007816 6.6e-137 491.5 344 63.4
SHI10157 Sapria himalayana HOM05D006015 ORTHO05D007816 1.1e-136 490.7 371 59.6
Solyc07g045470.3 Solanum lycopersicum HOM05D006015 ORTHO05D007816 1.1e-136 490.7 357 61.6
Potri.014G167200 Populus trichocarpa HOM05D006015 ORTHO05D007816 1.5e-136 490.3 357 61.9
QL04p068533 Quercus lobata HOM05D006015 ORTHO05D007816 1.9e-136 490.0 415 54.9
Rhsim04G0027900 Rhododendron simsii HOM05D006015 ORTHO05D007816 1.9e-136 490.0 415 56.1
Thhalv10002538m.g Eutrema salsugineum HOM05D006015 ORTHO05D007816 2.5e-136 489.6 353 61.2
Nitab4.5_0001867g0080 Nicotiana tabacum HOM05D006015 ORTHO05D007816 2.5e-136 489.6 357 61.6
TAR629G2010 Trochodendron aralioides HOM05D006015 ORTHO05D007816 2.5e-136 489.6 360 62.2
Atru.BG.41.p Acer truncatum HOM05D006015 ORTHO05D007816 3.3e-136 489.2 357 61.1
Sed0012767 Sechium edule HOM05D006015 ORTHO05D007816 3.3e-136 489.2 409 55.5
SEGI_05803 Sequoiadendron giganteum HOM05D006015 ORTHO05D007816 4.3e-136 488.8 359 61.0
PGSC0003DMG400017397 Solanum tuberosum HOM05D006015 ORTHO05D007816 4.3e-136 488.8 357 61.3
CSS0038739 Camellia sinensis var. sinensis HOM05D006015 ORTHO05D007816 5.6e-136 488.4 357 61.3
Os02g0798100 Oryza sativa ssp. japonica HOM05D006015 ORTHO05D007816 5.6e-136 488.4 357 61.6
CDE05G3376 Ceratophyllum demersum HOM05D006015 ORTHO05D007816 7.3e-136 488.0 410 57.8
Dinv26607 Davidia involucrata HOM05D006015 ORTHO05D007816 9.5e-136 487.6 364 62.1
Hma1.2p1_0545F.1_g175930 Hydrangea macrophylla HOM05D006015 ORTHO05D007816 1.6e-135 486.9 357 62.2
Rhsim06G0176400 Rhododendron simsii HOM05D006015 ORTHO05D007816 2.8e-135 486.1 415 55.2
AL3G42830 Arabidopsis lyrata HOM05D006015 ORTHO05D007816 3.6e-135 485.7 425 54.6
AT2G05320 Arabidopsis thaliana HOM05D006015 ORTHO05D007816 3.6e-135 485.7 404 56.7
unitig_37.g12711 Utricularia gibba HOM05D006015 ORTHO05D007816 6.2e-135 485.0 368 60.3
CARHR103100 Cardamine hirsuta HOM05D006015 ORTHO05D007816 8.0e-135 484.6 344 61.0
C03p55440 Brassica napus HOM05D006015 ORTHO05D007816 1.1e-134 484.2 353 60.3
Sed0014474 Sechium edule HOM05D006015 ORTHO05D007816 1.1e-134 484.2 412 55.3
BcaC01g03165 Brassica carinata HOM05D006015 ORTHO05D007816 3.1e-134 482.6 411 55.2
Zm00001eb192260 Zea mays HOM05D006015 ORTHO05D007816 3.1e-134 482.6 357 60.8
MSTRG.10825 Avicennia marina HOM05D006015 ORTHO05D007816 5.2e-134 481.9 408 54.2
CANSAT64G2535 Cannabis sativa HOM05D006015 ORTHO05D007816 5.2e-134 481.9 359 60.7
MBI16_g07770_MAGBIO Magnolia biondii HOM05D006015 ORTHO05D007816 5.2e-134 481.9 424 55.4
BolC3t17819H Brassica oleracea HOM05D006015 ORTHO05D007816 8.9e-134 481.1 411 55.2
CAN.G177.8 Capsicum annuum HOM05D006015 ORTHO05D007816 2.0e-133 479.9 409 55.3
A03p44610 Brassica napus HOM05D006015 ORTHO05D007816 9.8e-133 477.6 411 54.3
BraA03t13594Z Brassica rapa HOM05D006015 ORTHO05D007816 9.8e-133 477.6 411 54.3
Lj8P135T89 Lonicera japonica HOM05D006015 ORTHO05D007816 1.3e-132 477.2 336 62.8
Carub.0003s2938 Capsella rubella HOM05D006015 ORTHO05D007816 2.9e-132 476.1 358 58.9
HPP92_001839 Vanilla planifolia HOM05D006015 ORTHO05D007816 2.9e-132 476.1 362 59.7
AUR62015007 Chenopodium quinoa HOM05D006015 ORTHO05D007816 4.9e-132 475.3 343 64.1
Lj1P796T26 Lonicera japonica HOM05D006015 ORTHO05D007816 5.4e-131 471.9 336 61.3
Migut.J01779 Erythranthe guttata HOM05D006015 ORTHO05D007816 9.2e-131 471.1 370 57.8
Mapoly0086s0006 Marchantia polymorpha HOM05D006015 ORTHO05D007816 9.2e-131 471.1 358 58.4
Nn1g02851 Nelumbo nucifera HOM05D006015 ORTHO05D007816 1.6e-130 470.3 359 60.4
PSO302G0043 Papaver somniferum HOM05D006015 ORTHO05D007816 2.1e-130 469.9 414 54.8
SMO358G0350 Selaginella moellendorffii HOM05D006015 ORTHO05D007816 3.5e-130 469.2 414 54.1
PSO210G7679 Papaver somniferum HOM05D006015 ORTHO05D007816 1.3e-129 467.2 420 54.5
Gohir.A07G191800 Gossypium hirsutum HOM05D006015 ORTHO05D007816 3.9e-129 465.7 371 58.2
SGA_v2.0_scaffold94G28455 Striga asiatica HOM05D003478 ORTHO05D004196 1.1e-126 457.6 361 57.9
Actinidia07868 Actinidia chinensis HOM05D006015 ORTHO05D007816 1.3e-121 440.7 361 57.3
Prupe.3G198000 Prunus persica HOM05D006015 ORTHO05D007816 2.7e-114 416.4 283 64.3
Glyma.20G080200 Glycine max HOM05D006015 ORTHO05D007816 4.3e-112 409.1 283 62.5
Actinidia18833 Actinidia chinensis HOM05D006015 ORTHO05D007816 1.9e-107 393.7 361 52.4
AagrBONN_evm.TU.Sc2ySwM_368.1590 Anthoceros agrestis HOM05D006015 ORTHO05D007816 5.3e-102 375.6 359 50.4
SalBow1G4868 Salvia bowleyana HOM05D006015 ORTHO05D007816 2.5e-91 340.1 327 51.7
CBR_g52107 Chara braunii HOM05D006015 ORTHO05D000002 1.6e-90 337.4 285 54.7
SalBow6G1876 Salvia bowleyana HOM05D006015 ORTHO05D007816 1.5e-85 320.9 213 65.3
MSTRG.26113 Avicennia marina HOM05D006015 ORTHO05D007816 4.5e-77 292.7 214 59.3
Hma1.2p1_0545F.1_g175940 Hydrangea macrophylla HOM05D006015 ORTHO05D007816 6.1e-74 282.3 211 60.2
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 5.9e-53 212.6 199 53.3
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 9.8e-40 168.7 200 46.0
Actinidia35205 Actinidia chinensis HOM05D001060 ORTHO05D000905 3.0e-20 104.0 58 72.4
Nn5g28971 Nelumbo nucifera HOM05D006015 ORTHO05D007816 9.5e-19 99.0 95 49.5
EL10Ac8g18725 Beta vulgaris HOM05D006015 ORTHO05D007816 1.4e-14 85.1 82 51.2
Aa31LG8G11540 Aethionema arabicum HOM05D006015 ORTHO05D007816 7.8e-13 79.3 116 39.7


User provided reference genes

Program Settings