Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_5810 Physcomitrium patens HOM05D001960 ORTHO05D318620 2.8e-42 174.9 88 100.0
Pp3c20_18840 Physcomitrium patens HOM05D001960 ORTHO05D004348 1.8e-17 92.4 86 61.6
Sc02g0007720 Simmondsia chinensis HOM05D001960 ORTHO05D004348 1.5e-16 89.4 86 59.3
TWI32G0692 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 1.5e-16 89.4 86 59.3
TWI32G1350 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 1.5e-16 89.4 86 59.3
HPP92_006462 Vanilla planifolia HOM05D001960 ORTHO05D004348 2.0e-16 89.0 86 59.3
Lsat_1_v5_gn_3_102160 Lactuca sativa HOM05D001960 ORTHO05D004348 4.5e-16 87.8 86 60.5
Os01g0587000 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D004348 4.5e-16 87.8 86 58.1
Zm00001eb160620 Zea mays HOM05D001960 ORTHO05D004348 4.5e-16 87.8 86 58.1
Actinidia34797 Actinidia chinensis HOM05D001960 ORTHO05D004348 7.7e-16 87.0 87 58.6
BcaB07g30124 Brassica carinata HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
BcaC03g17524 Brassica carinata HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
BcaC06g33635 Brassica carinata HOM05D001960 ORTHO05D008957 7.7e-16 87.0 86 59.3
A02p36010 Brassica napus HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
C02p54850 Brassica napus HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
BolC2t11546H Brassica oleracea HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 7.7e-16 87.0 86 59.3
BraA02t08600Z Brassica rapa HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
CSS0022239 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 7.7e-16 87.0 87 58.6
Carub.0005s0725 Capsella rubella HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
Thhalv10004498m.g Eutrema salsugineum HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
Lj1g0025494 Lotus japonicus HOM05D001960 ORTHO05D004348 7.7e-16 87.0 87 58.6
Lalb_Chr02g0159521 Lupinus albus HOM05D001960 ORTHO05D004348 7.7e-16 87.0 87 58.6
Lalb_Chr02g0159571 Lupinus albus HOM05D001960 ORTHO05D004348 7.7e-16 87.0 87 58.6
Oeu050223.1 Olea europaea HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
Sp2g17360 Schrenkiella parvula HOM05D001960 ORTHO05D004348 7.7e-16 87.0 86 59.3
Actinidia38882 Actinidia chinensis HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
ATR0706G077 Amborella trichopoda HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Aqoxy3G03291 Aquilegia oxysepala HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
MSTRG.15485 Avicennia marina HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
MSTRG.3317 Avicennia marina HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
CANSAT11G2018 Cannabis sativa HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Cpa.g.sc14.35 Carica papaya HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Cfa007519 Carpinus fangiana HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Ca_04106_v3 Cicer arietinum L. HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Ca_04115_v3 Cicer arietinum L. HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
ClCG10G014880 Citrullus lanatus HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Ciclev10012084m.g Citrus clementina HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
COL.COLO4_25163 Corchorus olitorius HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
MELO3C009887.2 Cucumis melo HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
CsaV3_3G041630 Cucumis sativus L. HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
DCAR_011153 Daucus carota HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
DCAR_011154 Daucus carota HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Dinv33731 Davidia involucrata HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Duzib147G0831 Durio zibethinus HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Duzib187G1412 Durio zibethinus HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
ECA246G2943 Erigeron canadensis HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Migut.H00896 Erythranthe guttata HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Eucgr.I01925 Eucalyptus grandis HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Glyma.09G240300 Glycine max HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Glyma.18G256200 Glycine max HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Gohir.A07G215700 Gossypium hirsutum HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Gohir.A09G022100 Gossypium hirsutum HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Gohir.D07G222700 Gossypium hirsutum HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Gohir.D09G021300 Gossypium hirsutum HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Gorai.001G257000 Gossypium raimondii HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Gorai.006G025300 Gossypium raimondii HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
HanXRQChr15g0474171 Helianthus annuus HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
HanXRQChr17g0547421 Helianthus annuus HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Hma1.2p1_0423F.1_g150240 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Lj2A726T8 Lonicera japonica HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
MD09G1048000 Malus domestica HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Manes.17G022500 Manihot esculenta HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Manes.17G022600 Manihot esculenta HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Manes.17G022700 Manihot esculenta HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Medtr7g009485 Medicago truncatula HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Medtr7g009590 Medicago truncatula HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
PSO017G2769 Papaver somniferum HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
PSO478G2180 Papaver somniferum HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Phvul.008G043300 Phaseolus vulgaris HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Psat3g196680 Pisum sativum HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Prupe.3G271000 Prunus persica HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
PGR142G1484 Punica granatum HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Rhsim09G0146300 Rhododendron simsii HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
RcHm_v2.0_Chr2g0169031 Rosa chinensis HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
SalBow1G4343 Salvia bowleyana HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Sed0008481 Sechium edule HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Hund13234 Selenicereus undatus HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
SGA_v2.0_scaffold236G43786 Striga asiatica HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
SGA_v2.0_scaffold30G12526 Striga asiatica HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Thecc.04G075700 Theobroma cacao HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
TPR.G4258 Trifolium pratense HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
TWI60G1096 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
vmacro10254 Vaccinium macrocarpon HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
VMungo1383G3104 Vigna mungo HOM05D001960 ORTHO05D004348 1.0e-15 86.7 86 59.3
Aa31LG2G4500 Aethionema arabicum HOM05D001960 ORTHO05D004348 1.3e-15 86.3 86 58.1
FvH4_6g49160 Fragaria vesca HOM05D001960 ORTHO05D004348 1.3e-15 86.3 86 59.3
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.3e-15 86.3 86 59.3
FAN05G5323 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.3e-15 86.3 86 59.3
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.3e-15 86.3 86 59.3
FAN14G2932 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.3e-15 86.3 86 59.3
Aa31LG9G1760 Aethionema arabicum HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
Ah.10g031310 Amaranthus hybridus HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 59.3
Ah.12g065390 Amaranthus hybridus HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 59.3
AL5G18390 Arabidopsis lyrata HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
AL5G18410 Arabidopsis lyrata HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
AT3G28710 Arabidopsis thaliana HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
AT3G28715 Arabidopsis thaliana HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
EL10Ac2g02943 Beta vulgaris HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 59.3
BcaB04g19480 Brassica carinata HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
A09p03760 Brassica napus HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
C09p03950 Brassica napus HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
BolC9t53326H Brassica oleracea HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
BraA09t36012Z Brassica rapa HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
Carub.0005s0724 Capsella rubella HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
CARHR151640 Cardamine hirsuta HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
CiPaw.03G029300 Carya illinoinensis HOM05D001960 ORTHO05D004348 1.7e-15 85.9 87 57.5
CiPaw.04G019300 Carya illinoinensis HOM05D001960 ORTHO05D004348 1.7e-15 85.9 87 57.5
Thhalv10004497m.g Eutrema salsugineum HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
Hma1.2p1_0449F.1_g155170 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 1.7e-15 85.9 87 57.5
Hma1.2p1_2982F.1_g331260 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 1.7e-15 85.9 87 57.5
Lsat_1_v5_gn_2_88741 Lactuca sativa HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
Oeu060924.1 Olea europaea HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
Sp2g17353 Schrenkiella parvula HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
THA.LOC104805447 Tarenaya hassleriana HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
THA.LOC104823931 Tarenaya hassleriana HOM05D001960 ORTHO05D004348 1.7e-15 85.9 86 58.1
CDE06G0436 Ceratophyllum demersum HOM05D001960 ORTHO05D004348 2.2e-15 85.5 86 58.1
Migut.K01329 Erythranthe guttata HOM05D001960 ORTHO05D004348 2.2e-15 85.5 86 58.1
Lalb_Chr21g0318931 Lupinus albus HOM05D001960 ORTHO05D004348 2.2e-15 85.5 86 58.1
MD17G1048200 Malus domestica HOM05D001960 ORTHO05D004348 2.2e-15 85.5 86 58.1
QL02p080802 Quercus lobata HOM05D001960 ORTHO05D004348 2.2e-15 85.5 86 58.1
TAR374G0426 Trochodendron aralioides HOM05D001960 ORTHO05D004348 2.2e-15 85.5 86 58.1
Eucgr.I02249 Eucalyptus grandis HOM05D001960 ORTHO05D004348 2.9e-15 85.1 86 58.1
Nitab4.5_0013371g0010 Nicotiana tabacum HOM05D001960 ORTHO05D004348 2.9e-15 85.1 86 58.1
Peaxi162Scf00163g00105 Petunia axillaris HOM05D001960 ORTHO05D004348 2.9e-15 85.1 86 58.1
TAR629G1922 Trochodendron aralioides HOM05D001960 ORTHO05D004348 2.9e-15 85.1 86 57.0
Sed0005459 Sechium edule HOM05D001960 ORTHO05D004348 3.8e-15 84.7 86 58.1
Potri.017G079200 Populus trichocarpa HOM05D001960 ORTHO05D004348 5.0e-15 84.3 86 57.0
unitig_748.g8436 Utricularia gibba HOM05D001960 ORTHO05D004348 5.0e-15 84.3 86 57.0
CAN.G128.149 Capsicum annuum HOM05D001960 ORTHO05D004348 6.5e-15 84.0 86 57.0
Nn1g04484 Nelumbo nucifera HOM05D001960 ORTHO05D004348 6.5e-15 84.0 86 57.0
Nn1g04485 Nelumbo nucifera HOM05D001960 ORTHO05D004348 6.5e-15 84.0 86 57.0
Solyc10g081530.2 Solanum lycopersicum HOM05D001960 ORTHO05D004348 6.5e-15 84.0 86 57.0
Sopen10g032040 Solanum pennellii HOM05D001960 ORTHO05D004348 6.5e-15 84.0 86 57.0
PGSC0003DMG400028218 Solanum tuberosum HOM05D001960 ORTHO05D004348 6.5e-15 84.0 86 57.0
Nitab4.5_0000098g0050 Nicotiana tabacum HOM05D001960 ORTHO05D004348 8.5e-15 83.6 86 57.0
Peaxi162Scf00061g02912 Petunia axillaris HOM05D001960 ORTHO05D004348 8.5e-15 83.6 86 57.0
GSVIVG01011352001 Vitis vinifera HOM05D001960 ORTHO05D004348 1.1e-14 83.2 86 59.3
CBR_g20991 Chara braunii HOM05D001960 ORTHO05D004348 1.4e-14 82.8 86 54.7
CBR_g20375 Chara braunii HOM05D001960 ORTHO05D004348 1.9e-14 82.4 86 51.2
AUR62031635 Chenopodium quinoa HOM05D001960 ORTHO05D004348 1.9e-14 82.4 86 57.0
AUR62038866 Chenopodium quinoa HOM05D001960 ORTHO05D004348 1.9e-14 82.4 86 57.0
Mapoly0006s0177 Marchantia polymorpha HOM05D001960 ORTHO05D004348 2.5e-14 82.0 86 54.7
Mapoly0140s0023 Marchantia polymorpha HOM05D001960 ORTHO05D004348 2.5e-14 82.0 86 54.7
SMO137G0011 Selaginella moellendorffii HOM05D001960 ORTHO05D004348 2.5e-14 82.0 87 54.0
AagrBONN_evm.TU.Sc2ySwM_340.257 Anthoceros agrestis HOM05D001960 ORTHO05D004348 3.2e-14 81.6 86 53.5
CSS0024221 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 3.6e-13 78.2 81 56.8
Dinv33729 Davidia involucrata HOM05D001960 ORTHO05D004348 6.7e-12 73.9 86 52.3
arahy.Tifrunner.gnm1.ann1.EZF2RR Arachis hypogaea HOM05D001960 ORTHO05D004348 8.8e-12 73.6 120 42.5
arahy.Tifrunner.gnm1.ann1.M50Q99 Arachis hypogaea HOM05D001960 ORTHO05D004348 8.8e-12 73.6 120 42.5
Cre03.g176250 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D004348 4.3e-11 71.2 86 50.0
CSS0002033 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 9.1e-09 63.5 38 81.6
Haze_14570 Corylus avellana HOM05D001960 ORTHO05D004348 1.2e-08 63.2 48 68.8
MCO01G616 Micromonas commoda HOM05D001960 ORTHO05D004348 1.5e-08 62.8 86 39.5
Nitab4.5_0000387g0100 Nicotiana tabacum HOM05D001960 ORTHO05D004348 3.4e-08 61.6 48 66.7
Nitab4.5_0002087g0050 Nicotiana tabacum HOM05D001960 ORTHO05D004348 3.4e-08 61.6 48 66.7
PRCOL_00003698 Prasinoderma coloniale HOM05D001960 ORTHO05D004348 4.5e-08 61.2 86 43.0
CDE04G1714 Ceratophyllum demersum HOM05D001960 ORTHO05D004348 7.7e-08 60.5 34 85.3
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 7.7e-08 60.5 36 77.8
Sabra17G0070400 Salix brachista HOM05D001960 ORTHO05D004348 1.7e-07 59.3 34 82.4
CSS0019148 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 2.9e-07 58.5 38 76.3
Haze_26095 Corylus avellana HOM05D001960 ORTHO05D004348 5.5e-06 54.3 83 34.9


User provided reference genes

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