Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 5.7e-122 441.0 240 100.0
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 2.8e-76 289.3 230 69.1
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 6.7e-46 188.3 190 56.8
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 3.3e-45 186.0 164 57.9
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 6.9e-43 178.3 196 54.1
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 1.5e-42 177.2 177 57.1
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 2.2e-41 173.3 164 56.7
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 1.9e-40 170.2 185 54.6
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 7.1e-40 168.3 164 57.9
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 9.3e-40 167.9 174 56.3
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 9.3e-40 167.9 183 51.9
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 1.2e-39 167.5 170 54.7
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 1.6e-39 167.2 169 53.8
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 2.1e-39 166.8 180 53.3
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 2.7e-39 166.4 181 52.5
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 2.7e-39 166.4 173 56.1
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 6.0e-39 165.2 183 54.6
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 6.0e-39 165.2 166 54.2
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 6.0e-39 165.2 180 52.2
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 7.9e-39 164.9 184 52.2
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 1.0e-38 164.5 184 53.3
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 1.3e-38 164.1 184 53.3
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 1.3e-38 164.1 184 52.2
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 1.8e-38 163.7 184 52.2
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 2.3e-38 163.3 186 51.6
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 2.3e-38 163.3 180 51.7
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 2.3e-38 163.3 172 54.7
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 2.3e-38 163.3 182 52.2
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 2.3e-38 163.3 162 56.8
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 3.0e-38 162.9 194 51.5
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 3.0e-38 162.9 148 60.1
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 3.9e-38 162.5 162 54.9
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 3.9e-38 162.5 221 46.2
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 3.9e-38 162.5 158 53.8
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 3.9e-38 162.5 150 59.3
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 3.9e-38 162.5 165 57.0
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 5.1e-38 162.2 160 53.1
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 5.1e-38 162.2 180 51.1
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 5.1e-38 162.2 185 50.8
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 6.7e-38 161.8 180 52.8
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 8.7e-38 161.4 221 45.7
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 8.7e-38 161.4 193 50.8
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 8.7e-38 161.4 156 58.3
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 1.1e-37 161.0 180 51.1
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 1.1e-37 161.0 190 46.8
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 1.1e-37 161.0 190 46.8
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 1.5e-37 160.6 193 50.3
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 1.9e-37 160.2 166 54.8
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 1.9e-37 160.2 166 54.8
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 1.9e-37 160.2 166 54.8
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 2.5e-37 159.8 156 58.3
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 2.5e-37 159.8 188 49.5
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 3.3e-37 159.5 132 62.9
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 3.3e-37 159.5 164 54.3
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 3.3e-37 159.5 185 52.4
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 4.3e-37 159.1 170 55.3
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 4.3e-37 159.1 183 52.5
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 5.6e-37 158.7 209 47.8
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 5.6e-37 158.7 216 46.8
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 5.6e-37 158.7 216 46.8
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 5.6e-37 158.7 154 53.9
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 5.6e-37 158.7 190 51.6
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 5.6e-37 158.7 180 53.9
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 7.4e-37 158.3 182 51.1
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 9.6e-37 157.9 174 51.7
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 1.3e-36 157.5 184 47.3
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 1.6e-36 157.1 186 51.1
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 2.1e-36 156.8 213 47.4
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 2.8e-36 156.4 182 51.6
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 3.7e-36 156.0 193 50.8
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 3.7e-36 156.0 173 54.9
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 3.7e-36 156.0 178 52.8
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 4.8e-36 155.6 155 53.5
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 4.8e-36 155.6 172 53.5
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 4.8e-36 155.6 153 54.9
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 6.2e-36 155.2 184 52.2
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 6.2e-36 155.2 173 53.2
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 6.2e-36 155.2 192 49.5
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 8.2e-36 154.8 178 50.0
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 8.2e-36 154.8 180 52.2
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 1.4e-35 154.1 194 49.0
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 1.4e-35 154.1 171 53.2
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.8e-35 153.7 190 51.6
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 1.8e-35 153.7 173 53.8
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 2.4e-35 153.3 173 53.8
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 2.4e-35 153.3 177 52.0
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 2.4e-35 153.3 157 54.1
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 3.1e-35 152.9 184 51.6
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 5.3e-35 152.1 184 50.5
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 5.3e-35 152.1 167 52.7
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 6.9e-35 151.8 215 46.5
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 1.2e-34 151.0 174 50.6
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 1.2e-34 151.0 174 50.6
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 1.5e-34 150.6 173 53.2
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 2.6e-34 149.8 200 46.5
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 3.4e-34 149.4 224 44.2
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 5.8e-34 148.7 185 50.8
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 1.0e-33 147.9 190 49.5
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 1.7e-33 147.1 178 50.6
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 1.7e-33 147.1 134 56.7
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 1.7e-33 147.1 219 43.8
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 2.9e-33 146.4 191 47.6
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 2.9e-33 146.4 174 48.3
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 2.9e-33 146.4 219 44.3
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 5.5e-32 142.1 174 47.7
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.0e-30 137.9 192 46.4
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 3.9e-30 136.0 172 52.3
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 8.7e-30 134.8 121 53.7
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 1.1e-29 134.4 166 50.0
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.9e-29 133.7 183 45.4
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 3.3e-29 132.9 126 56.3
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 4.3e-29 132.5 143 53.8
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 5.7e-29 132.1 119 58.0
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 4.8e-28 129.0 214 40.7
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.0e-25 121.3 221 44.3
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 1.3e-25 120.9 163 47.2
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 2.1e-23 113.6 113 54.9
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 4.6e-23 112.5 172 44.8
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 4.3e-21 105.9 142 47.2
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 2.4e-19 100.1 162 42.0
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 2.2e-17 93.6 205 36.6
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 2.7e-15 86.7 71 59.2
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 7.9e-15 85.1 60 61.7
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 3.3e-13 79.7 213 35.2
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.7e-09 67.4 161 36.0
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 6.5e-09 65.5 115 39.1
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 6.7e-06 55.5 86 41.9


User provided reference genes

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