Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 4.9e-167 591.3 347 100.0
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 3.1e-68 263.1 346 49.7
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 6.9e-52 208.8 316 45.3
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 5.8e-51 205.7 339 41.3
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 8.4e-50 201.8 343 39.7
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.1e-49 201.4 350 42.0
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 2.4e-49 200.3 347 39.5
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 5.4e-49 199.1 354 39.5
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 5.4e-49 199.1 343 48.1
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 3.5e-48 196.4 343 44.9
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 3.5e-48 196.4 347 40.1
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 7.9e-48 195.3 341 41.1
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.8e-47 194.1 342 38.0
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.9e-47 193.0 350 37.7
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 5.1e-47 192.6 341 39.6
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 6.7e-47 192.2 350 37.7
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 6.7e-47 192.2 350 41.4
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 1.5e-46 191.0 350 43.4
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 5.6e-46 189.1 354 40.7
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 7.4e-46 188.7 349 37.8
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 9.6e-46 188.3 347 39.5
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 1.3e-45 188.0 357 44.5
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.6e-45 187.6 346 37.6
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 1.6e-45 187.6 343 39.4
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 4.8e-45 186.0 355 38.6
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 8.1e-45 185.3 352 40.1
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 8.1e-45 185.3 352 40.1
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.1e-44 184.9 349 39.5
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 2.4e-44 183.7 344 38.7
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 3.1e-44 183.3 345 40.0
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 3.1e-44 183.3 349 39.8
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 3.1e-44 183.3 349 39.8
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 3.1e-44 183.3 350 40.6
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 4.0e-44 183.0 349 40.7
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 4.0e-44 183.0 351 38.5
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.5e-43 181.0 348 36.5
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 1.5e-43 181.0 350 39.7
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.0e-43 180.6 343 36.2
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 2.6e-43 180.3 343 38.8
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 4.5e-43 179.5 349 39.3
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 5.8e-43 179.1 345 39.1
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 7.6e-43 178.7 351 37.3
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 1.3e-42 177.9 343 36.4
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 1.7e-42 177.6 339 36.3
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.2e-42 177.2 330 39.1
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.2e-42 177.2 343 36.4
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 2.9e-42 176.8 355 35.8
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 2.9e-42 176.8 350 36.9
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 3.8e-42 176.4 356 37.4
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 4.9e-42 176.0 349 38.1
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 8.4e-42 175.3 345 39.4
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.1e-41 174.9 344 39.0
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.1e-41 174.9 344 39.0
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 2.5e-41 173.7 343 35.9
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.5e-41 173.7 343 35.9
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 3.2e-41 173.3 359 37.9
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 3.2e-41 173.3 340 36.5
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 3.2e-41 173.3 343 38.8
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 4.2e-41 172.9 346 37.0
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 7.1e-41 172.2 349 38.1
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 7.1e-41 172.2 349 38.1
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 7.1e-41 172.2 341 36.4
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 7.1e-41 172.2 341 37.2
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 9.3e-41 171.8 342 36.0
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 9.3e-41 171.8 362 34.5
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.2e-40 171.4 369 38.2
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.6e-40 171.0 349 40.1
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.1e-40 170.6 340 35.6
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 6.0e-40 169.1 353 34.6
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.9e-40 168.7 344 35.2
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.3e-39 167.9 330 37.3
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 1.8e-39 167.5 360 36.7
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.3e-39 167.2 360 37.2
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 2.3e-39 167.2 343 36.4
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 3.9e-39 166.4 350 38.6
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 3.9e-39 166.4 350 38.6
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.1e-38 164.9 383 35.5
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.1e-38 164.9 338 37.0
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.5e-38 164.5 349 38.1
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 3.3e-38 163.3 347 38.9
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 3.3e-38 163.3 341 35.8
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 7.4e-38 162.2 344 34.9
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 7.4e-38 162.2 343 37.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 7.4e-38 162.2 338 36.1
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 9.6e-38 161.8 342 37.7
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.3e-37 161.4 363 34.4
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.3e-37 161.4 350 38.3
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 8.2e-37 158.7 333 36.3
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 1.1e-36 158.3 336 37.8
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 1.1e-36 158.3 346 39.3
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 1.1e-36 158.3 346 39.3
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.8e-36 157.5 337 35.6
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.2e-35 154.8 357 34.5
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 5.8e-35 152.5 290 38.3
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.3e-34 151.4 358 33.8
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 1.7e-34 151.0 362 37.0
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 2.9e-34 150.2 357 33.9
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 2.9e-34 150.2 337 38.3
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 2.9e-34 150.2 344 35.2
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 5.0e-34 149.4 358 33.5
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 1.1e-33 148.3 362 33.4
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 1.4e-33 147.9 344 33.7
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.2e-33 146.7 350 36.6
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 5.5e-33 146.0 352 33.0
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.2e-32 144.8 350 36.0
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.6e-32 144.4 372 34.7
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 7.9e-32 142.1 342 35.1
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 7.9e-32 142.1 431 33.4
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.0e-31 141.7 383 32.4
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 1.3e-31 141.4 366 33.6
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 5.1e-31 139.4 352 32.4
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 2.5e-30 137.1 375 32.5
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 7.4e-30 135.6 330 34.2
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 3.1e-28 130.2 347 34.3
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 6.9e-28 129.0 358 31.3
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 2.0e-27 127.5 353 32.9
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 2.6e-27 127.1 311 36.0
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 4.5e-27 126.3 340 33.5
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 1.9e-25 120.9 277 35.0
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 5.5e-25 119.4 338 32.5
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 1.1e-22 111.7 326 33.1
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 1.8e-20 104.4 303 33.0
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.8e-20 104.4 345 35.7
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 3.4e-19 100.1 273 30.4
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 3.4e-19 100.1 218 35.8
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 7.7e-19 99.0 359 30.6
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.7e-18 97.8 333 32.4
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 7.2e-17 92.4 129 47.3
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 1.2e-16 91.7 282 30.1
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 2.7e-16 90.5 153 37.3
Cre02.g082300 Chlamydomonas reinhardtii HOM05D004638 ORTHO05D005443 1.1e-14 85.1 413 31.5
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.0e-14 84.3 264 30.3
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 2.8e-13 80.5 316 31.6
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 6.3e-13 79.3 244 41.0
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.4e-12 78.2 119 42.0
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 3.5e-11 73.6 124 37.1
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.7e-10 71.2 107 38.3
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 3.8e-10 70.1 88 46.6
PRCOL_00002513 Prasinoderma coloniale HOM05D004638 ORTHO05D005443 6.5e-10 69.3 384 26.8
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 8.8e-07 58.9 80 38.8
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 3.3e-06 57.0 89 39.3
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.4e-06 56.6 86 39.5
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 4.4e-06 56.6 117 36.8


User provided reference genes

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