Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 0.0e+00 4758.0 2427 100.0
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 0.0e+00 1091.3 2515 32.2
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis HOM05D002759 ORTHO05D003290 9.0e-292 1008.4 2500 31.2
SMO356G0583 Selaginella moellendorffii HOM05D002759 ORTHO05D003290 8.4e-197 693.0 1936 30.3
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 9.0e-183 646.4 2454 26.0
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 1.4e-180 639.0 2453 25.7
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 6.3e-176 623.6 2445 25.7
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 7.2e-172 610.1 2440 25.9
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 4.7e-163 580.9 2446 25.6
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.2e-160 572.0 2427 25.2
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 1.3e-157 562.8 2491 24.6
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 1.3e-157 562.8 2442 24.3
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 1.3e-157 562.8 2479 25.4
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 5.0e-157 560.8 2420 25.1
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 6.5e-157 560.5 2466 25.7
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 3.6e-155 554.7 2431 25.2
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 6.7e-154 550.4 2454 24.7
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.5e-153 549.3 2472 24.4
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 7.5e-153 547.0 2459 24.1
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 2.8e-152 545.0 2489 24.3
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 4.1e-151 541.2 2496 25.0
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 9.1e-151 540.0 2473 24.3
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 1.6e-150 539.3 2480 23.9
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 1.6e-150 539.3 2485 24.9
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 1.6e-150 539.3 2461 25.2
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 2.0e-150 538.9 2434 24.8
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 2.0e-150 538.9 2489 25.0
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 4.5e-150 537.7 2435 25.1
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 5.9e-150 537.3 2507 24.3
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 7.7e-150 537.0 2479 24.2
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 7.7e-150 537.0 2428 25.4
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 1.0e-149 536.6 2437 24.3
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 6.5e-149 533.9 2487 25.0
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 8.5e-149 533.5 2477 25.3
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.5e-148 532.7 2496 23.5
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 3.2e-148 531.6 2491 24.0
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 4.2e-148 531.2 2489 23.8
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 5.5e-148 530.8 2485 23.6
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 9.4e-148 530.0 2493 24.7
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 3.6e-147 528.1 2462 24.2
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 8.0e-147 526.9 2493 24.7
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 5.2e-146 524.2 2490 23.8
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 6.8e-146 523.9 2439 24.2
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 1.2e-145 523.1 2497 24.9
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 7.5e-145 520.4 2483 24.8
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 8.3e-144 516.9 2511 24.6
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 1.1e-143 516.5 2492 24.3
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 5.4e-143 514.2 2433 24.8
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 1.2e-142 513.1 2464 24.6
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 2.0e-142 512.3 2508 24.6
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 2.2e-141 508.8 2434 24.4
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.2e-141 508.8 2466 24.4
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 3.8e-141 508.1 2456 24.6
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 3.8e-141 508.1 2263 24.5
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 5.0e-141 507.7 2432 24.5
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 1.1e-140 506.5 2367 24.6
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 1.1e-140 506.5 2422 24.5
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.2e-140 505.0 2477 24.4
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 1.2e-139 503.1 2484 24.4
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 2.1e-139 502.3 2480 23.8
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 3.6e-139 501.5 1920 26.3
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 2.3e-138 498.8 2479 23.6
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 1.2e-137 496.5 2470 24.7
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.5e-137 496.1 2482 23.9
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 2.0e-137 495.7 2466 22.9
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 1.4e-135 489.6 2498 24.1
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 3.1e-135 488.4 2466 23.6
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 5.4e-135 487.6 2450 23.9
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 1.6e-134 486.1 2418 24.5
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 2.7e-134 485.3 2479 23.5
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 4.5e-134 484.6 2457 23.7
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 1.3e-133 483.0 2424 23.8
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 1.7e-133 482.6 2418 24.5
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.5e-132 479.6 2494 22.9
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 1.4e-130 473.0 2122 24.3
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 2.6e-129 468.8 1922 25.0
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 2.2e-128 465.7 1915 25.5
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 2.7e-126 458.8 2473 23.1
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 3.3e-124 451.8 2393 23.5
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.0e-122 446.8 2435 23.0
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 7.5e-121 440.7 2553 23.3
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 1.4e-119 436.4 2463 22.5
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 1.4e-119 436.4 2463 22.5
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 1.9e-119 436.0 2457 23.3
CBR_g18638 Chara braunii HOM05D002759 ORTHO05D003290 6.0e-118 431.0 3080 22.5
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.9e-116 426.0 2434 23.5
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 3.3e-116 425.2 1828 25.7
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 4.7e-115 421.4 2474 22.3
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.4e-113 415.2 2367 23.5
SEGI_09272 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 3.9e-109 401.7 1447 26.3
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 1.5e-108 399.8 2496 22.6
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 2.0e-105 389.4 2253 23.4
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 1.3e-104 386.7 1912 24.2
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 1.7e-104 386.3 2172 23.7
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 6.4e-104 384.4 1964 24.0
SEGI_09006 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 1.6e-102 379.8 704 35.7
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 6.0e-102 377.9 2487 22.7
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 5.1e-101 374.8 1788 24.0
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 3.4e-97 362.1 1410 27.2
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 5.1e-93 348.2 1614 23.9
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 1.1e-87 330.5 1438 25.6
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 3.5e-86 325.5 1257 26.2
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 6.7e-85 321.2 802 30.0
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 6.7e-85 321.2 1283 27.1
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 3.3e-84 318.9 1373 25.7
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 2.4e-79 302.8 1929 22.3
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 7.1e-79 301.2 927 28.8
ATR0661G443 Amborella trichopoda HOM05D002759 ORTHO05D003290 1.8e-77 296.6 1522 24.4
ATR0661G182 Amborella trichopoda HOM05D002759 ORTHO05D003290 5.3e-74 285.0 562 34.0
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 1.2e-73 283.9 1279 25.6
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 6.3e-67 261.5 780 27.7
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 1.4e-66 260.4 924 25.8
SEGI_24894 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 5.0e-64 251.9 552 31.5
SEGI_00066 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 2.5e-63 249.6 560 31.4
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 1.2e-62 247.3 1303 23.1
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 3.9e-61 242.3 1308 24.2
FvH4_5g29930 Fragaria vesca HOM05D002759 ORTHO05D003290 8.2e-59 234.6 341 40.2
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 1.2e-57 230.7 1607 23.0
CARHR230000 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.1e-55 224.2 317 38.5
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 1.9e-55 223.4 1900 22.2
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 7.2e-55 221.5 1900 22.1
Ah.07g205400 Amaranthus hybridus HOM05D002759 ORTHO05D003290 1.1e-52 214.2 311 37.0
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 3.1e-50 206.1 1880 20.9
FAN04G1156 Fragaria x ananassa HOM05D002759 ORTHO05D003290 5.3e-50 205.3 343 37.3
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 1.4e-47 197.2 1672 21.1
Cre01.g029200 Chlamydomonas reinhardtii HOM05D002759 ORTHO05D003290 7.2e-47 194.9 316 34.5
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 4.7e-46 192.2 337 35.0
BcaB05g23798 Brassica carinata HOM05D002759 ORTHO05D003290 7.4e-44 184.9 1070 22.3
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 1.3e-43 184.1 911 24.4
SEGI_32877 Sequoiadendron giganteum HOM05D015553 ORTHO05D015291 8.2e-43 181.4 318 36.5
SEGI_06029 Sequoiadendron giganteum HOM05D015553 ORTHO05D015291 9.1e-42 177.9 342 33.3
Oeu037466.1 Olea europaea HOM05D002759 ORTHO05D003290 4.5e-41 175.6 202 46.0
Atru.chr6.1022 Acer truncatum HOM05D002759 ORTHO05D003290 3.8e-40 172.6 313 33.9
CARHR230010 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.5e-39 170.6 1019 24.2
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 1.9e-39 170.2 1485 21.5
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.5e-39 169.9 174 44.3
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 6.1e-38 165.2 2034 19.4
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 4.0e-37 162.5 322 31.4
unitig_26.g9017 Utricularia gibba HOM05D002759 ORTHO05D003290 7.5e-36 158.3 202 38.6
Aqoxy3G00698 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 3.5e-33 149.4 645 24.0
Aqoxy3G00697 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 5.0e-32 145.6 202 37.6
SEGI_36881 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 8.5e-32 144.8 153 51.6
vmacro01786 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 8.0e-30 138.3 202 38.6
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 6.8e-29 135.2 1599 21.3
CARHR073260 Cardamine hirsuta HOM05D002759 ORTHO05D003290 6.8e-29 135.2 179 41.9
vmacro01782 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 2.6e-28 133.3 129 45.7
SEGI_22976 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 5.7e-28 132.1 354 29.7
Cpa.g.sc148.31 Carica papaya HOM05D002759 ORTHO05D003290 3.7e-27 129.4 594 25.1
SEGI_38062 Sequoiadendron giganteum HOM05D015553 ORTHO05D015291 3.7e-27 129.4 252 35.3
Actinidia00221 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.2e-25 124.4 153 41.2
C04p13080 Brassica napus HOM05D002759 ORTHO05D003290 1.6e-25 124.0 313 29.1
MD08G1226700 Malus domestica HOM05D002759 ORTHO05D003290 4.7e-22 112.5 310 27.4
RcHm_v2.0_Chr7g0223761 Rosa chinensis HOM05D002759 ORTHO05D003290 1.4e-21 110.9 173 34.1
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 4.4e-20 105.9 835 21.8
SEGI_11513 Sequoiadendron giganteum HOM05D015553 ORTHO05D015291 1.3e-19 104.4 253 31.2
SEGI_36049 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 2.4e-18 100.1 324 26.5
FAN13G1302 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.1e-18 99.8 655 24.0
Ca_21888_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 4.1e-18 99.4 201 29.4
CARHR254490 Cardamine hirsuta HOM05D002759 ORTHO05D003290 7.8e-17 95.1 161 34.2
Oeu043988.1 Olea europaea HOM05D002759 ORTHO05D003290 2.1e-14 87.0 101 38.6
MD08G1226100 Malus domestica HOM05D002759 ORTHO05D003290 8.0e-14 85.1 259 25.1
C04p13010 Brassica napus HOM05D002759 ORTHO05D003290 7.5e-12 78.6 164 30.5
C04p13060 Brassica napus HOM05D002759 ORTHO05D003290 7.5e-12 78.6 164 30.5
Cpa.g.sc148.29 Carica papaya HOM05D002759 ORTHO05D003290 4.9e-11 75.9 324 26.5
SHI26607 Sapria himalayana HOM05D002759 ORTHO05D003290 1.8e-10 73.9 493 21.1
vmacro01780 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 4.1e-10 72.8 120 37.5
COL.COLO4_16679 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.2e-09 71.2 128 35.2
CARHR254480 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.0e-09 70.5 403 23.6
COL.COLO4_38329 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.7e-08 67.4 83 41.0
vmacro01784 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 3.9e-08 66.2 187 29.9
CARHR284390 Cardamine hirsuta HOM05D002759 ORTHO05D003290 6.6e-08 65.5 104 33.7


User provided reference genes

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