Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_2780 Physcomitrium patens HOM05D000810 ORTHO05D001064 3.6e-135 485.3 327 100.0
Pp3c8_2770 Physcomitrium patens HOM05D000810 ORTHO05D001064 1.5e-133 479.9 324 100.0
Pp3c3_36940 Physcomitrium patens HOM05D000810 ORTHO05D001064 1.0e-97 360.9 329 76.0
Pp3c3_36952 Physcomitrium patens HOM05D000810 ORTHO05D001064 1.0e-97 360.9 329 76.0
Pp3c3_36960 Physcomitrium patens HOM05D000810 ORTHO05D001064 1.0e-97 360.9 329 76.0
Pp3c3_36976 Physcomitrium patens HOM05D000810 ORTHO05D001064 1.0e-97 360.9 329 76.0
Pp3c3_36740 Physcomitrium patens HOM05D000810 ORTHO05D001064 8.7e-89 331.3 325 69.2
Pp3c8_3320 Physcomitrium patens HOM05D000810 ORTHO05D001064 3.5e-82 309.3 323 64.1
Pp3c8_3323 Physcomitrium patens HOM05D000810 ORTHO05D001064 3.5e-82 309.3 323 64.1
Mapoly0051s0008 Marchantia polymorpha HOM05D000810 ORTHO05D001064 4.0e-41 172.9 215 57.2
SEGI_09065 Sequoiadendron giganteum HOM05D000810 ORTHO05D003737 1.7e-20 104.4 199 42.2
CBR_g38449 Chara braunii HOM05D000810 ORTHO05D001064 2.3e-12 77.4 219 37.0
Nn8g40980 Nelumbo nucifera HOM05D000810 ORTHO05D003737 3.9e-12 76.6 145 38.6
MBI14_g08033_MAGBIO Magnolia biondii HOM05D000810 ORTHO05D001064 1.5e-11 74.7 182 36.3
MBI13_g31547_MAGBIO Magnolia biondii HOM05D000810 ORTHO05D003737 3.3e-11 73.6 124 37.9
Nn2g11178 Nelumbo nucifera HOM05D000810 ORTHO05D001064 4.7e-10 69.7 166 38.0
Dinv26444 Davidia involucrata HOM05D000810 ORTHO05D003737 1.8e-09 67.8 146 34.2
TAR625G0247 Trochodendron aralioides HOM05D000810 ORTHO05D003737 3.1e-09 67.0 192 31.8
SEGI_40668 Sequoiadendron giganteum HOM05D000810 ORTHO05D001064 4.0e-09 66.6 206 34.0
TAR636G1527 Trochodendron aralioides HOM05D000810 ORTHO05D001064 8.9e-09 65.5 149 38.9
GSVIVG01031557001 Vitis vinifera HOM05D000810 ORTHO05D003737 8.9e-09 65.5 111 36.9
Haze_21980 Corylus avellana HOM05D000810 ORTHO05D003737 1.2e-08 65.1 111 37.8
PSO339G3390 Papaver somniferum HOM05D000810 ORTHO05D001064 1.5e-08 64.7 138 39.1
TAR560G0003 Trochodendron aralioides HOM05D000810 ORTHO05D001064 1.5e-08 64.7 145 38.6
vmacro18740 Vaccinium macrocarpon HOM05D000810 ORTHO05D003737 1.5e-08 64.7 192 33.9
MBI16_g18212_MAGBIO Magnolia biondii HOM05D000810 ORTHO05D003737 3.4e-08 63.5 142 33.1
Pp3c12_22620 Physcomitrium patens HOM05D000810 ORTHO05D001064 3.4e-08 63.5 74 48.6
TAR636G3620 Trochodendron aralioides HOM05D000810 ORTHO05D003737 3.4e-08 63.5 151 33.1
Cpa.g.sc176.3 Carica papaya HOM05D000810 ORTHO05D003737 4.4e-08 63.2 151 35.1
CiPaw.08G033900 Carya illinoinensis HOM05D000810 ORTHO05D003737 4.4e-08 63.2 112 40.2
Actinidia21890 Actinidia chinensis HOM05D000810 ORTHO05D003737 7.5e-08 62.4 148 35.8
Cfa013430 Carpinus fangiana HOM05D000810 ORTHO05D003737 7.5e-08 62.4 152 33.6
PSO079G0035 Papaver somniferum HOM05D000810 ORTHO05D003737 1.3e-07 61.6 202 29.2
Prupe.6G071600 Prunus persica HOM05D000810 ORTHO05D001064 1.7e-07 61.2 146 37.0
Glyma.11G136700 Glycine max HOM05D000810 ORTHO05D001064 2.2e-07 60.8 146 37.0
PSO063G3242 Papaver somniferum HOM05D000810 ORTHO05D001064 2.9e-07 60.5 138 37.7
PSO423G0285 Papaver somniferum HOM05D000810 ORTHO05D003737 2.9e-07 60.5 202 28.2
Potri.003G009900 Populus trichocarpa HOM05D000810 ORTHO05D003737 2.9e-07 60.5 133 31.6
QL11p004807 Quercus lobata HOM05D000810 ORTHO05D003737 2.9e-07 60.5 152 32.9
Psat5g288000 Pisum sativum HOM05D000810 ORTHO05D001064 4.9e-07 59.7 145 37.2
Actinidia38811 Actinidia chinensis HOM05D000810 ORTHO05D003737 6.4e-07 59.3 153 32.7
Os01g0844800 Oryza sativa ssp. japonica HOM05D000810 ORTHO05D001064 8.3e-07 58.9 148 33.8
AUR62033247 Chenopodium quinoa HOM05D000810 ORTHO05D003737 1.1e-06 58.5 137 38.7
Glyma.11G137100 Glycine max HOM05D000810 ORTHO05D001064 1.4e-06 58.2 146 37.0
Lj3g0017979 Lotus japonicus HOM05D000810 ORTHO05D001064 1.4e-06 58.2 141 36.2
MD03G1087000 Malus domestica HOM05D000810 ORTHO05D001064 1.4e-06 58.2 143 38.5
Ciclev10027726m.g Citrus clementina HOM05D000810 ORTHO05D001064 1.9e-06 57.8 134 35.8
MBI05_g29681_MAGBIO Magnolia biondii HOM05D000810 ORTHO05D001064 1.9e-06 57.8 169 34.9
Hund26319 Selenicereus undatus HOM05D000810 ORTHO05D003737 1.9e-06 57.8 134 33.6
Ca_02041_v3 Cicer arietinum L. HOM05D000810 ORTHO05D003737 2.4e-06 57.4 110 36.4
MD11G1096100 Malus domestica HOM05D000810 ORTHO05D001064 2.4e-06 57.4 143 36.4
PSO513G0041 Papaver somniferum HOM05D000810 ORTHO05D001064 2.4e-06 57.4 137 33.6
Aqoxy7G02728 Aquilegia oxysepala HOM05D000810 ORTHO05D003737 3.2e-06 57.0 206 28.2
CiPaw.07G195000 Carya illinoinensis HOM05D000810 ORTHO05D003737 3.2e-06 57.0 109 35.8
Medtr2g097670 Medicago truncatula HOM05D000810 ORTHO05D001064 3.2e-06 57.0 147 39.5
Atru.chr1.2653_Atru.chr1.2654 Acer truncatum HOM05D000810 ORTHO05D003737 4.1e-06 56.6 110 35.5
Atru.chr3.3964 Acer truncatum HOM05D000810 ORTHO05D001064 4.1e-06 56.6 134 35.8
ATR0626G013 Amborella trichopoda HOM05D000810 ORTHO05D003737 4.1e-06 56.6 206 30.6
Sc14g0001380 Simmondsia chinensis HOM05D000810 ORTHO05D003737 4.1e-06 56.6 88 40.9
Gohir.D08G011700 Gossypium hirsutum HOM05D000810 ORTHO05D001064 5.4e-06 56.2 147 35.4
PSO339G0343 Papaver somniferum HOM05D000810 ORTHO05D001064 5.4e-06 56.2 107 38.3
Aqoxy1G00888 Aquilegia oxysepala HOM05D000810 ORTHO05D001064 7.0e-06 55.8 143 36.4
Ciclev10007330m.g Citrus clementina HOM05D000810 ORTHO05D003737 7.0e-06 55.8 110 36.4
Gohir.D02G114000 Gossypium hirsutum HOM05D000810 ORTHO05D003737 7.0e-06 55.8 111 33.3
Gorai.005G128800 Gossypium raimondii HOM05D000810 ORTHO05D003737 7.0e-06 55.8 111 33.3
Manes.01G170300 Manihot esculenta HOM05D000810 ORTHO05D001064 9.2e-06 55.5 147 39.5
QL08p060631 Quercus lobata HOM05D000810 ORTHO05D001064 9.2e-06 55.5 147 34.7


User provided reference genes

Program Settings