Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_24950 Physcomitrium patens HOM05D003476 ORTHO05D004057 1.1e-56 223.0 112 100.0
Pp3c24_20710 Physcomitrium patens HOM05D003476 ORTHO05D004057 5.9e-37 157.5 100 82.0
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 2.7e-26 122.1 73 82.2
TAR633G0614 Trochodendron aralioides HOM05D003476 ORTHO05D004057 5.3e-22 107.8 74 66.2
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 1.6e-21 106.3 89 60.7
AagrBONN_evm.TU.Sc2ySwM_228.5500 Anthoceros agrestis HOM05D003476 ORTHO05D004057 2.6e-21 105.5 84 59.5
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 5.9e-21 104.4 94 56.4
ClCG07G004010 Citrullus lanatus HOM05D003476 ORTHO05D004057 5.9e-21 104.4 84 61.9
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.0e-20 103.6 85 58.8
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 6.5e-20 100.9 90 55.6
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 8.5e-20 100.5 91 56.0
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 1.1e-19 100.1 91 53.8
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 1.5e-19 99.8 74 64.9
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 1.5e-19 99.8 86 55.8
Lj1A950T61 Lonicera japonica HOM05D003476 ORTHO05D004057 1.9e-19 99.4 76 63.2
Sc06g0000400 Simmondsia chinensis HOM05D003476 ORTHO05D004057 2.5e-19 99.0 87 57.5
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 2.5e-19 99.0 78 61.5
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 3.2e-19 98.6 85 58.8
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 3.2e-19 98.6 76 61.8
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 3.2e-19 98.6 78 59.0
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 4.2e-19 98.2 85 57.6
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 5.5e-19 97.8 82 58.5
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 5.5e-19 97.8 78 60.3
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 5.5e-19 97.8 89 56.2
CARHR134890 Cardamine hirsuta HOM05D003476 ORTHO05D004057 7.2e-19 97.4 87 56.3
HanXRQChr08g0222281 Helianthus annuus HOM05D003476 ORTHO05D004057 7.2e-19 97.4 86 58.1
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 7.2e-19 97.4 86 55.8
MD08G1058400 Malus domestica HOM05D003476 ORTHO05D004057 9.4e-19 97.1 74 62.2
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 1.2e-18 96.7 74 60.8
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 1.2e-18 96.7 91 51.6
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 1.2e-18 96.7 87 56.3
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 1.2e-18 96.7 85 52.9
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 1.6e-18 96.3 84 59.5
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 2.1e-18 95.9 91 50.5
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 2.1e-18 95.9 73 60.3
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.1e-18 95.9 85 56.5
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 2.1e-18 95.9 76 63.2
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 2.7e-18 95.5 76 60.5
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 3.6e-18 95.1 92 53.3
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 3.6e-18 95.1 98 51.0
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 3.6e-18 95.1 90 54.4
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 3.6e-18 95.1 87 56.3
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 3.6e-18 95.1 87 56.3
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 3.6e-18 95.1 82 57.3
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 4.7e-18 94.7 81 55.6
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 4.7e-18 94.7 87 52.9
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 4.7e-18 94.7 74 60.8
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 4.7e-18 94.7 74 60.8
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 4.7e-18 94.7 76 60.5
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 4.7e-18 94.7 89 52.8
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 6.1e-18 94.4 80 57.5
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 6.1e-18 94.4 87 54.0
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 6.1e-18 94.4 85 55.3
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 6.1e-18 94.4 80 57.5
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 6.1e-18 94.4 78 53.8
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 6.1e-18 94.4 87 58.6
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 6.1e-18 94.4 87 55.2
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 6.1e-18 94.4 85 55.3
Aqoxy214s003 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 1.0e-17 93.6 82 53.7
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 1.0e-17 93.6 74 58.1
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 1.0e-17 93.6 74 58.1
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 1.0e-17 93.6 74 58.1
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 1.0e-17 93.6 74 58.1
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 1.0e-17 93.6 87 58.6
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 1.0e-17 93.6 94 52.1
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 1.0e-17 93.6 93 51.6
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 1.4e-17 93.2 72 58.3
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 1.4e-17 93.2 99 51.5
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 1.4e-17 93.2 86 52.3
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 1.4e-17 93.2 87 55.2
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 1.4e-17 93.2 76 57.9
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 1.8e-17 92.8 73 58.9
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 1.8e-17 92.8 73 58.9
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 1.8e-17 92.8 87 57.5
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.8e-17 92.8 85 54.1
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 1.8e-17 92.8 73 58.9
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.8e-17 92.8 87 54.0
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 2.3e-17 92.4 86 55.8
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 2.3e-17 92.4 76 57.9
BcaB02g09065 Brassica carinata HOM05D003476 ORTHO05D004057 3.0e-17 92.0 74 58.1
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 3.0e-17 92.0 74 58.1
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 3.0e-17 92.0 73 57.5
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 3.0e-17 92.0 90 47.8
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 3.0e-17 92.0 88 53.4
FAN15G1698 Fragaria x ananassa HOM05D003476 ORTHO05D004057 3.0e-17 92.0 94 53.2
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 3.0e-17 92.0 91 51.6
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 3.0e-17 92.0 72 56.9
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 3.0e-17 92.0 75 57.3
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 3.0e-17 92.0 86 54.7
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 4.0e-17 91.7 76 57.9
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 4.0e-17 91.7 76 56.6
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 4.0e-17 91.7 85 50.6
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 5.2e-17 91.3 88 54.5
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 5.2e-17 91.3 85 50.6
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 6.7e-17 90.9 78 55.1
Sopen04g028030 Solanum pennellii HOM05D003476 ORTHO05D004057 6.7e-17 90.9 84 53.6
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 8.8e-17 90.5 89 52.8
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 8.8e-17 90.5 95 50.5
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 8.8e-17 90.5 90 50.0
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 1.2e-16 90.1 94 50.0
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 1.2e-16 90.1 85 52.9
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 1.2e-16 90.1 98 49.0
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 1.5e-16 89.7 92 53.3
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 1.5e-16 89.7 75 57.3
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 1.5e-16 89.7 75 57.3
Atru.chr12.241 Acer truncatum HOM05D003476 ORTHO05D004057 2.0e-16 89.4 73 57.5
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 2.0e-16 89.4 73 57.5
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 2.0e-16 89.4 85 52.9
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 2.6e-16 89.0 90 51.1
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 3.3e-16 88.6 74 54.1
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 3.3e-16 88.6 85 54.1
vmacro06993 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 3.3e-16 88.6 75 53.3
ATR0618G113 Amborella trichopoda HOM05D003476 ORTHO05D004057 4.4e-16 88.2 71 60.6
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 4.4e-16 88.2 82 52.4
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 7.5e-16 87.4 73 54.8
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 7.5e-16 87.4 87 51.7
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 9.7e-16 87.0 85 52.9
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 1.3e-15 86.7 78 53.8
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 1.3e-15 86.7 79 53.2
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 1.3e-15 86.7 78 51.3
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 1.7e-15 86.3 75 56.0
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 1.7e-15 86.3 89 50.6
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 1.7e-15 86.3 76 55.3
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 1.7e-15 86.3 73 58.9
Cpa.g.c40050 Carica papaya HOM05D003476 ORTHO05D004057 2.2e-15 85.9 72 58.3
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 3.7e-15 85.1 74 54.1
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 4.8e-15 84.7 87 49.4
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 8.2e-15 84.0 83 51.8
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 1.1e-14 83.6 71 57.7
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 1.8e-14 82.8 73 57.5
CARHR253320 Cardamine hirsuta HOM05D003476 ORTHO05D004057 3.1e-14 82.0 91 46.2
MBI16_g28612_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 5.3e-14 81.3 76 51.3
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 1.6e-13 79.7 67 55.2
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 2.0e-13 79.3 75 54.7
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 5.9e-13 77.8 67 55.2
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.0e-09 67.0 60 51.7
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 1.0e-09 67.0 60 51.7
Cre12.g524200 Chlamydomonas reinhardtii HOM05D003476 ORTHO05D004057 1.4e-09 66.6 92 40.2
MBI14_g06613_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 4.0e-09 65.1 81 44.4
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 5.2e-09 64.7 58 55.2
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 2.6e-08 62.4 52 55.8
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 9.8e-08 60.5 58 50.0
PRCOL_00000631 Prasinoderma coloniale HOM05D003476 ORTHO05D004057 3.7e-07 58.5 76 42.1
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 4.8e-07 58.2 55 50.9
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 8.3e-07 57.4 61 42.6
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 1.4e-06 56.6 58 48.3
Migut.F01424 Erythranthe guttata HOM05D003476 ORTHO05D004057 1.4e-06 56.6 41 58.5
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 1.8e-06 56.2 58 46.6
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 2.4e-06 55.8 73 43.8
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 5.4e-06 54.7 67 46.3


User provided reference genes

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