Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.7e-304 1047.3 516 100.0
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 9.3e-162 574.3 511 59.9
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.1e-121 440.3 522 49.2
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 7.8e-76 288.9 517 36.9
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 5.4e-45 186.4 537 27.7
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 2.7e-44 184.1 551 28.1
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 3.5e-44 183.7 548 25.7
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 5.1e-43 179.9 529 27.6
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 5.1e-43 179.9 529 27.6
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 6.6e-43 179.5 533 28.1
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 6.6e-43 179.5 525 27.8
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 1.9e-42 177.9 542 26.4
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 2.5e-42 177.6 537 27.9
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 4.3e-42 176.8 526 27.8
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 4.3e-42 176.8 526 27.8
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 5.6e-42 176.4 521 27.4
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 5.6e-42 176.4 546 26.4
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 7.3e-42 176.0 539 27.8
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.3e-41 175.3 537 26.4
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.3e-41 175.3 531 27.5
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.8e-41 174.1 454 29.3
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 2.8e-41 174.1 543 26.9
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 4.8e-41 173.3 453 30.0
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 8.1e-41 172.6 540 27.2
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.4e-40 171.8 540 27.6
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 1.8e-40 171.4 509 28.1
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.8e-40 171.4 555 26.8
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 3.1e-40 170.6 509 28.1
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 3.1e-40 170.6 542 27.3
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 4.0e-40 170.2 528 27.3
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 9.0e-40 169.1 529 27.0
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 9.0e-40 169.1 499 26.9
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.2e-39 168.7 508 27.6
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 2.0e-39 167.9 498 25.9
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 3.4e-39 167.2 501 26.9
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 4.5e-39 166.8 533 26.5
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 5.8e-39 166.4 479 28.4
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 5.8e-39 166.4 553 26.8
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 7.6e-39 166.0 501 27.7
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 7.6e-39 166.0 495 26.7
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 7.6e-39 166.0 493 27.8
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 9.9e-39 165.6 492 27.8
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 9.9e-39 165.6 515 27.2
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 9.9e-39 165.6 529 25.7
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 1.3e-38 165.2 492 27.0
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.7e-38 164.9 501 27.9
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.7e-38 164.9 537 25.9
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 2.2e-38 164.5 538 25.8
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 2.2e-38 164.5 525 26.1
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 3.8e-38 163.7 491 27.1
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 3.8e-38 163.7 495 25.9
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 8.4e-38 162.5 513 26.9
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.4e-37 161.8 553 27.1
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.4e-37 161.8 551 24.5
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.4e-37 161.8 496 28.0
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.9e-37 161.4 506 27.1
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 2.4e-37 161.0 493 27.2
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 2.4e-37 161.0 573 25.1
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.2e-37 160.2 511 26.2
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 5.4e-37 159.8 530 25.5
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 7.1e-37 159.5 575 25.6
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 1.2e-36 158.7 502 27.1
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.6e-36 158.3 496 27.2
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 2.1e-36 157.9 495 26.1
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 2.7e-36 157.5 495 27.5
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 4.6e-36 156.8 520 26.2
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 4.6e-36 156.8 507 27.4
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 4.6e-36 156.8 544 25.4
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 6.0e-36 156.4 500 26.0
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 6.0e-36 156.4 522 25.3
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 7.9e-36 156.0 532 24.1
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.0e-35 155.6 562 25.3
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.0e-35 155.6 509 25.1
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.3e-35 155.2 542 25.5
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.8e-35 154.8 539 26.7
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 1.8e-35 154.8 489 24.7
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 3.0e-35 154.1 541 25.5
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 3.0e-35 154.1 522 24.9
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 3.0e-35 154.1 522 25.9
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 5.1e-35 153.3 535 25.0
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.1e-34 152.1 538 26.4
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.1e-34 152.1 529 25.5
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.5e-34 151.8 569 24.3
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.5e-34 151.8 569 24.3
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 1.9e-34 151.4 508 24.6
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.9e-34 151.4 407 28.7
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 3.3e-34 150.6 498 26.7
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 4.3e-34 150.2 526 26.8
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 4.3e-34 150.2 501 26.3
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 5.6e-34 149.8 507 26.8
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 5.6e-34 149.8 550 26.5
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 7.4e-34 149.4 500 26.8
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 9.6e-34 149.1 539 26.0
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 9.6e-34 149.1 524 26.7
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 1.3e-33 148.7 532 25.6
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 2.1e-33 147.9 516 25.2
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 2.8e-33 147.5 543 25.2
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 3.7e-33 147.1 557 25.5
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.7e-33 147.1 492 27.4
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 1.8e-32 144.8 488 25.0
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 1.8e-32 144.8 523 24.5
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.1e-32 144.1 506 27.9
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 3.1e-32 144.1 489 25.6
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 3.1e-32 144.1 502 24.1
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 5.3e-32 143.3 537 25.1
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 6.9e-32 142.9 506 27.9
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.0e-31 141.4 521 24.8
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 3.4e-31 140.6 550 25.1
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.0e-30 139.0 496 26.0
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.3e-30 138.7 515 23.5
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 2.2e-30 137.9 577 24.6
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 3.8e-30 137.1 530 26.0
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 4.9e-30 136.7 515 25.2
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 3.2e-29 134.0 546 24.9
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 1.0e-27 129.0 526 23.6
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.0e-27 127.5 512 24.8
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 3.9e-27 127.1 422 27.0
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 3.9e-27 127.1 510 22.0
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.1e-26 125.6 497 26.4
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 5.7e-26 123.2 490 23.3
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.4e-26 122.9 523 24.5
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 9.6e-26 122.5 531 24.7
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 4.8e-25 120.2 148 37.8
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 4.8e-25 120.2 199 33.2
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.8e-24 118.2 161 35.4
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.2e-21 107.5 503 22.5
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.5e-21 106.7 465 23.0
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 9.3e-21 105.9 487 23.8
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 2.7e-20 104.4 125 43.2
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.0e-19 102.4 147 34.7
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-19 101.3 197 29.9
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.4e-18 96.3 465 23.2
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-17 95.5 174 30.5
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.6e-17 95.1 384 24.7
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-16 92.4 192 27.1
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-16 92.4 192 27.1
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 7.7e-15 86.3 208 31.2
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-14 84.7 472 23.3
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 2.1e-12 78.2 111 34.2
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 6.1e-12 76.6 59 55.9
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.5e-10 72.0 213 23.0
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.7e-09 68.6 70 45.7
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 2.2e-09 68.2 63 46.0
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.8e-08 65.1 56 46.4


User provided reference genes

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