Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 1.6e-103 379.4 190 100.0
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 2.7e-50 202.6 137 75.9
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 3.5e-50 202.2 121 81.8
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 6.0e-50 201.4 121 81.8
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 1.0e-49 200.7 121 81.0
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 1.3e-49 200.3 136 75.7
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 1.3e-49 200.3 132 73.5
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 5.1e-49 198.4 130 76.9
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 1.1e-48 197.2 130 76.9
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 1.5e-48 196.8 129 75.2
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.5e-48 196.8 128 77.3
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 1.9e-48 196.4 126 77.0
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 2.5e-48 196.1 138 73.2
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 3.3e-48 195.7 123 78.0
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 5.6e-48 194.9 163 66.9
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 5.6e-48 194.9 121 80.2
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 7.3e-48 194.5 124 77.4
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 7.3e-48 194.5 125 80.0
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 9.6e-48 194.1 123 78.9
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 9.6e-48 194.1 120 81.7
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 1.6e-47 193.4 124 80.6
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 2.1e-47 193.0 138 71.7
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 2.1e-47 193.0 136 74.3
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 2.8e-47 192.6 118 79.7
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 2.8e-47 192.6 134 75.4
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 4.8e-47 191.8 114 80.7
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 4.8e-47 191.8 127 79.5
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 4.8e-47 191.8 168 63.1
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 4.8e-47 191.8 145 67.6
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 8.1e-47 191.0 127 78.0
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 8.1e-47 191.0 113 84.1
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 8.1e-47 191.0 126 77.0
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 8.1e-47 191.0 121 80.2
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 1.1e-46 190.7 118 79.7
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 1.4e-46 190.3 182 58.8
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 1.4e-46 190.3 134 72.4
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 1.8e-46 189.9 147 68.7
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 1.8e-46 189.9 151 64.9
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 1.8e-46 189.9 121 77.7
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 1.8e-46 189.9 132 75.0
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 2.4e-46 189.5 117 80.3
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 3.1e-46 189.1 118 78.8
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 3.1e-46 189.1 172 62.8
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 4.0e-46 188.7 119 79.8
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 5.3e-46 188.3 132 70.5
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 5.3e-46 188.3 118 77.1
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 6.9e-46 188.0 125 75.2
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 1.2e-45 187.2 148 65.5
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.5e-45 186.8 137 70.8
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 1.5e-45 186.8 135 73.3
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 2.0e-45 186.4 115 79.1
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 2.0e-45 186.4 152 66.4
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 2.6e-45 186.0 102 88.2
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 3.4e-45 185.7 189 57.7
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 3.4e-45 185.7 133 71.4
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 3.4e-45 185.7 131 74.0
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 4.5e-45 185.3 157 65.0
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 4.5e-45 185.3 188 58.0
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 5.8e-45 184.9 135 73.3
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 7.6e-45 184.5 102 87.3
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 7.6e-45 184.5 116 80.2
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 9.9e-45 184.1 119 77.3
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 1.3e-44 183.7 118 77.1
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 2.2e-44 183.0 180 60.6
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 2.2e-44 183.0 133 72.9
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 3.8e-44 182.2 117 78.6
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 1.1e-43 180.6 139 69.8
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 1.4e-43 180.3 119 77.3
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 1.9e-43 179.9 120 75.8
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 2.4e-43 179.5 105 85.7
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 2.4e-43 179.5 132 71.2
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 2.4e-43 179.5 169 62.1
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 2.4e-43 179.5 160 63.8
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 3.2e-43 179.1 120 75.8
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 7.1e-43 177.9 118 75.4
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.6e-42 176.8 115 78.3
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.0e-41 174.1 168 60.7
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.8e-41 173.3 125 72.0
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 3.0e-41 172.6 135 65.9
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 3.9e-41 172.2 130 70.8
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 5.1e-41 171.8 121 74.4
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 6.7e-41 171.4 168 59.5
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 8.7e-41 171.0 125 71.2
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.1e-40 170.6 176 58.0
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 2.5e-40 169.5 142 63.4
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 3.3e-40 169.1 127 71.7
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 3.3e-40 169.1 114 74.6
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 3.3e-40 169.1 125 70.4
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 5.6e-40 168.3 114 76.3
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 9.6e-40 167.5 111 75.7
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 1.6e-39 166.8 110 77.3
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 2.1e-39 166.4 103 80.6
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.1e-39 166.4 113 75.2
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.1e-39 166.4 113 75.2
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 3.7e-39 165.6 102 81.4
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 3.7e-39 165.6 102 81.4
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 3.7e-39 165.6 102 81.4
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 4.8e-39 165.2 185 54.6
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 8.1e-39 164.5 112 75.0
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 8.1e-39 164.5 112 75.0
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 9.3e-35 151.0 123 61.8
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 6.0e-34 148.3 138 59.4
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 2.3e-33 146.4 112 72.3
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 4.8e-31 138.7 120 65.0
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 4.8e-31 138.7 86 82.6
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.8e-30 136.7 138 59.4
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.5e-27 126.3 135 53.3
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 1.8e-25 120.2 81 74.1
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.1e-24 117.5 79 75.9
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 7.4e-24 114.8 66 84.8
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 7.4e-24 114.8 63 85.7
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 7.4e-24 114.8 63 85.7
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 2.8e-23 112.8 68 82.4
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 4.8e-23 112.1 105 58.1
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 6.3e-23 111.7 71 76.1
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 8.2e-23 111.3 64 82.8
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.1e-22 110.9 103 58.3
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 1.4e-22 110.5 70 80.0
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 9.0e-22 107.8 80 66.2
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.3e-20 104.0 112 52.7
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 1.9e-19 100.1 125 48.8
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.4e-17 94.0 122 44.3
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.8e-17 93.6 76 63.2
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.8e-17 93.6 111 49.5
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 1.1e-16 90.9 61 72.1
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 3.7e-15 85.9 158 36.1
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 1.2e-13 80.9 51 76.5
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 1.9e-11 73.6 60 66.7
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 2.6e-08 63.2 56 58.9
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 3.7e-07 59.3 85 43.5
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.1e-06 57.8 85 41.2


User provided reference genes

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