Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 1.8e-167 592.4 283 100.0
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 1.0e-101 374.0 268 64.9
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 5.0e-101 371.7 270 62.2
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 2.4e-95 352.8 242 63.6
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 7.0e-95 351.3 251 61.0
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 2.0e-94 349.7 241 63.1
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 2.7e-94 349.4 243 63.0
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 5.9e-94 348.2 254 60.2
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 5.9e-94 348.2 242 62.8
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 1.0e-93 347.4 241 62.7
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 1.0e-93 347.4 242 62.0
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 1.0e-93 347.4 242 62.0
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 1.3e-93 347.1 247 60.3
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 1.3e-93 347.1 241 62.7
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 1.7e-93 346.7 253 61.3
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 1.7e-93 346.7 242 63.2
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 1.7e-93 346.7 242 62.0
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.3e-93 346.3 242 63.2
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.9e-93 345.9 242 63.2
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 3.8e-93 345.5 242 61.6
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 6.5e-93 344.7 242 62.8
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 6.5e-93 344.7 240 62.1
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 6.5e-93 344.7 242 62.8
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 8.6e-93 344.4 242 62.4
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 1.1e-92 344.0 241 63.5
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 1.1e-92 344.0 242 62.8
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 1.5e-92 343.6 242 61.6
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 1.9e-92 343.2 242 61.6
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 1.9e-92 343.2 242 62.0
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 1.9e-92 343.2 242 62.8
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 2.5e-92 342.8 242 62.4
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 3.3e-92 342.4 242 62.4
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 4.2e-92 342.0 242 62.4
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 4.2e-92 342.0 242 61.2
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 4.2e-92 342.0 242 62.0
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 4.2e-92 342.0 242 60.7
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 7.2e-92 341.3 242 60.7
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 9.5e-92 340.9 242 62.8
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 9.5e-92 340.9 247 59.9
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 1.2e-91 340.5 241 61.4
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 1.2e-91 340.5 241 63.1
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 1.2e-91 340.5 246 61.8
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 2.1e-91 339.7 241 62.2
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 2.1e-91 339.7 242 61.6
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 2.1e-91 339.7 247 60.7
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 2.8e-91 339.3 242 60.3
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 2.8e-91 339.3 243 60.9
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 3.6e-91 339.0 241 62.2
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 3.6e-91 339.0 242 61.6
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 6.1e-91 338.2 242 60.7
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 6.1e-91 338.2 242 60.3
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 6.1e-91 338.2 242 61.6
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 1.0e-90 337.4 251 59.4
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 1.4e-90 337.0 241 61.4
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 1.4e-90 337.0 249 61.0
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 1.4e-90 337.0 242 59.9
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 1.8e-90 336.7 242 60.7
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 1.8e-90 336.7 242 60.3
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 1.8e-90 336.7 249 61.0
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 1.8e-90 336.7 241 61.4
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 1.8e-90 336.7 242 60.3
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 1.8e-90 336.7 244 61.1
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 2.3e-90 336.3 241 61.4
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 2.3e-90 336.3 234 62.8
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 3.0e-90 335.9 241 62.7
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 3.0e-90 335.9 241 62.7
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 3.0e-90 335.9 241 61.8
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 4.0e-90 335.5 241 61.0
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 4.0e-90 335.5 241 61.0
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 4.0e-90 335.5 241 61.0
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 4.0e-90 335.5 234 63.2
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 4.0e-90 335.5 234 63.2
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 4.0e-90 335.5 242 59.9
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 5.2e-90 335.1 241 61.0
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 5.2e-90 335.1 249 59.4
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 5.2e-90 335.1 242 60.3
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 5.2e-90 335.1 242 60.3
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 6.8e-90 334.7 241 61.8
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 6.8e-90 334.7 243 59.3
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 8.9e-90 334.3 242 59.5
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 8.9e-90 334.3 242 59.5
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 8.9e-90 334.3 242 59.5
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 1.2e-89 334.0 241 61.8
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 1.5e-89 333.6 247 58.3
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 2.0e-89 333.2 242 61.2
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 2.0e-89 333.2 242 60.3
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 2.0e-89 333.2 238 62.6
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 2.0e-89 333.2 242 59.5
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 2.6e-89 332.8 242 60.3
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 2.6e-89 332.8 241 61.8
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 2.6e-89 332.8 242 60.7
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 3.4e-89 332.4 242 60.3
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 3.4e-89 332.4 244 61.9
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 5.7e-89 331.6 251 58.2
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 7.5e-89 331.3 241 60.2
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 7.5e-89 331.3 242 59.5
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 7.5e-89 331.3 242 59.5
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 9.8e-89 330.9 241 60.6
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 9.8e-89 330.9 241 59.8
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 9.8e-89 330.9 242 59.9
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 9.8e-89 330.9 241 59.8
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 1.3e-88 330.5 241 60.6
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 1.3e-88 330.5 242 59.1
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 1.7e-88 330.1 247 57.5
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 2.8e-88 329.3 242 58.7
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 4.9e-88 328.6 241 60.2
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 8.3e-88 327.8 241 60.2
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 1.1e-87 327.4 229 63.8
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 5.4e-87 325.1 259 56.8
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 7.0e-87 324.7 275 54.2
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 1.6e-86 323.6 241 61.0
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 3.5e-86 322.4 275 54.2
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 3.5e-86 322.4 235 60.0
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 7.8e-86 321.2 242 57.9
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 1.1e-84 317.4 245 60.0
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 1.2e-83 313.9 261 56.7
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 3.6e-83 312.4 305 48.9
CDE05G3391 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 4.4e-81 305.4 229 61.6
CDE11G0920 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 3.7e-80 302.4 229 60.7
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 3.7e-80 302.4 238 58.4
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 5.4e-79 298.5 242 54.5
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.7e-78 296.2 248 56.0
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.1e-76 290.8 241 55.2
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 3.3e-76 289.3 242 54.5
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 1.4e-71 273.9 253 52.2
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 3.5e-70 269.2 222 57.2
CSS0044663 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.1e-67 260.0 227 54.2
Dinv01021 Davidia involucrata HOM05D004928 ORTHO05D005901 1.1e-63 247.7 197 57.4
Nn6g35246 Nelumbo nucifera HOM05D004928 ORTHO05D005901 4.9e-56 222.2 169 60.4
Nn2g13837 Nelumbo nucifera HOM05D004928 ORTHO05D005901 1.1e-55 221.1 161 60.9
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-50 202.6 171 53.8
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 4.0e-50 202.6 135 63.0
Lalb_Chr15g0083731 Lupinus albus HOM05D004928 ORTHO05D005901 9.0e-50 201.4 240 43.8
PRCOL_00004641 Prasinoderma coloniale HOM05D004928 ORTHO05D005901 4.5e-41 172.6 202 43.1
Haze_05273 Corylus avellana HOM05D004928 ORTHO05D005901 7.6e-41 171.8 115 67.8
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 1.7e-40 170.6 164 51.8
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 1.7e-40 170.6 107 63.6
MD05G1245600 Malus domestica HOM05D004928 ORTHO05D005901 1.8e-37 160.6 206 40.8
Haze_05268 Corylus avellana HOM05D004928 ORTHO05D005901 6.7e-37 158.7 162 48.8
Zm00001eb207070 Zea mays HOM05D004928 ORTHO05D005901 5.5e-31 139.0 224 37.9
Cpa.g.sc30.100 Carica papaya HOM05D004928 ORTHO05D005901 5.6e-28 129.0 83 65.1
Os02g0173600 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 6.2e-27 125.6 78 64.1
TWI63G0736 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 5.3e-26 122.5 145 44.8
Haze_05283 Corylus avellana HOM05D004928 ORTHO05D005901 7.4e-20 102.1 80 56.2
Haze_05288 Corylus avellana HOM05D004928 ORTHO05D005901 2.4e-18 97.1 69 59.4
Cfa025962 Carpinus fangiana HOM05D004928 ORTHO05D005901 6.9e-18 95.5 270 25.2
Haze_05286 Corylus avellana HOM05D004928 ORTHO05D005901 6.9e-18 95.5 69 59.4
Ca_01984_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 3.8e-16 89.7 46 80.4
Aa31LG9G8830 Aethionema arabicum HOM05D004928 ORTHO05D005901 5.5e-15 85.9 57 57.9
TPR.G688 Trifolium pratense HOM05D004928 ORTHO05D005901 3.6e-14 83.2 53 71.7
MD14G1109200 Malus domestica HOM05D004928 ORTHO05D005901 4.8e-11 72.8 49 55.1
Manes.05G100300 Manihot esculenta HOM05D002775 ORTHO05D003262 1.8e-10 70.9 227 26.0
Zm00001eb414970 Zea mays HOM05D002775 ORTHO05D003262 1.8e-10 70.9 206 28.2
arahy.Tifrunner.gnm1.ann1.7KL7FE Arachis hypogaea HOM05D002775 ORTHO05D003262 9.1e-10 68.6 221 25.8
Gohir.A12G165600 Gossypium hirsutum HOM05D002775 ORTHO05D003262 1.2e-09 68.2 239 24.7
Gohir.D12G168700 Gossypium hirsutum HOM05D002775 ORTHO05D003262 1.2e-09 68.2 239 24.7
Gorai.008G181500 Gossypium raimondii HOM05D002775 ORTHO05D003262 1.5e-09 67.8 239 24.7
CiPaw.06G083600 Carya illinoinensis HOM05D002775 ORTHO05D003262 4.5e-09 66.2 227 27.3
unitig_699.g19501 Utricularia gibba HOM05D000087 ORTHO05D000439 4.5e-09 66.2 207 26.1
Psat2g121200 Pisum sativum HOM05D002775 ORTHO05D003262 7.7e-09 65.5 208 27.9
arahy.Tifrunner.gnm1.ann1.BG5WH1 Arachis hypogaea HOM05D002775 ORTHO05D003262 1.0e-08 65.1 221 25.3
HanXRQChr08g0210491 Helianthus annuus HOM05D002775 ORTHO05D003262 1.0e-08 65.1 207 26.6
Nn3g17211 Nelumbo nucifera HOM05D002775 ORTHO05D003262 1.0e-08 65.1 217 25.8
PGR102G0209 Punica granatum HOM05D002775 ORTHO05D003262 1.3e-08 64.7 229 27.9
Duzib251G0721 Durio zibethinus HOM05D002775 ORTHO05D003262 2.2e-08 63.9 237 26.6
Os08g0169800 Oryza sativa ssp. japonica HOM05D002775 ORTHO05D003262 2.9e-08 63.5 206 26.7
PSO017G0262 Papaver somniferum HOM05D002775 ORTHO05D003262 2.9e-08 63.5 229 25.3
PSO478G4429 Papaver somniferum HOM05D002775 ORTHO05D003262 2.9e-08 63.5 207 27.5
Sp4g23570 Schrenkiella parvula HOM05D002775 ORTHO05D003262 3.8e-08 63.2 274 24.1
CDE05G2768 Ceratophyllum demersum HOM05D002775 ORTHO05D003262 6.5e-08 62.4 197 27.9
Actinidia07834 Actinidia chinensis HOM05D002775 ORTHO05D003262 1.1e-07 61.6 201 26.4
Lalb_Chr10g0098201 Lupinus albus HOM05D002775 ORTHO05D003262 1.1e-07 61.6 217 25.3
FvH4_4g31490 Fragaria vesca HOM05D002775 ORTHO05D003262 2.5e-07 60.5 219 24.7
FAN12G3929 Fragaria x ananassa HOM05D002775 ORTHO05D003262 2.5e-07 60.5 219 24.7
BcaC05g25324 Brassica carinata HOM05D002775 ORTHO05D003262 4.2e-07 59.7 207 26.1
Ca_04781_v3 Cicer arietinum L. HOM05D002775 ORTHO05D003262 4.2e-07 59.7 211 26.1
FAN07G2427 Fragaria x ananassa HOM05D002775 ORTHO05D003262 5.5e-07 59.3 219 24.7
Prupe.1G272900 Prunus persica HOM05D002775 ORTHO05D003262 5.5e-07 59.3 207 26.1
Sed0026850 Sechium edule HOM05D002775 ORTHO05D003262 7.2e-07 58.9 203 26.1
Cc06_g18960 Coffea canephora HOM05D002775 ORTHO05D003262 1.2e-06 58.2 237 25.7
MD14G1085300 Malus domestica HOM05D002775 ORTHO05D003262 1.2e-06 58.2 186 26.3
Carub.0004s2357 Capsella rubella HOM05D002775 ORTHO05D003262 1.6e-06 57.8 139 30.9
BcaC02g12889 Brassica carinata HOM05D002775 ORTHO05D003262 2.1e-06 57.4 139 30.9
TPR.G37102 Trifolium pratense HOM05D002775 ORTHO05D003262 2.1e-06 57.4 210 27.1
CARHR136340 Cardamine hirsuta HOM05D002775 ORTHO05D003262 4.7e-06 56.2 139 30.9
Thhalv10016879m.g Eutrema salsugineum HOM05D002775 ORTHO05D003262 7.9e-06 55.5 139 30.2


User provided reference genes

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