Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.9e-238 828.2 415 100.0
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 3.9e-203 711.4 415 87.0
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 1.5e-162 576.6 367 77.9
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 8.5e-158 560.8 375 73.9
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 7.2e-157 557.8 373 72.4
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 3.6e-156 555.4 381 71.9
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 8.0e-156 554.3 368 73.1
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 8.0e-156 554.3 365 74.8
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 8.0e-156 554.3 368 74.2
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 3.0e-155 552.4 368 73.4
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 4.0e-155 552.0 368 73.1
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 8.8e-155 550.8 346 77.7
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 3.4e-154 548.9 385 70.4
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 7.5e-154 547.7 366 73.0
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 3.7e-153 545.4 368 73.4
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 1.1e-152 543.9 368 72.0
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 7.0e-152 541.2 370 73.0
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 1.6e-151 540.0 370 70.3
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 2.7e-151 539.3 384 71.6
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 3.5e-151 538.9 369 71.5
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 3.5e-151 538.9 401 66.3
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 7.7e-151 537.7 398 67.8
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.3e-150 537.0 380 68.4
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 1.3e-150 537.0 365 72.6
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.7e-150 536.6 370 71.6
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 2.2e-150 536.2 380 69.7
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 5.0e-150 535.0 381 69.8
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 1.1e-149 533.9 381 69.8
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.9e-149 533.1 376 70.5
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 2.5e-149 532.7 381 69.6
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 3.2e-149 532.3 367 68.9
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 4.2e-149 531.9 347 74.4
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 5.5e-149 531.6 381 69.3
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 7.2e-149 531.2 344 74.4
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 7.2e-149 531.2 367 72.2
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 9.4e-149 530.8 374 68.4
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 9.4e-149 530.8 345 73.3
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.2e-148 530.4 376 69.4
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 1.6e-148 530.0 344 74.1
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 2.1e-148 529.6 344 74.1
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 4.7e-148 528.5 369 71.3
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 4.7e-148 528.5 366 70.5
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 8.0e-148 527.7 346 73.1
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.4e-147 526.9 382 67.8
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.4e-147 526.9 376 68.6
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.8e-147 526.6 368 69.0
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 2.3e-147 526.2 382 68.1
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 3.0e-147 525.8 365 69.0
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 6.8e-147 524.6 415 64.1
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 8.8e-147 524.2 370 69.5
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 8.8e-147 524.2 355 72.1
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 2.0e-146 523.1 353 72.8
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 2.6e-146 522.7 344 73.5
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 4.4e-146 521.9 368 70.9
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 7.5e-146 521.2 354 72.0
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 7.5e-146 521.2 344 73.3
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 1.7e-145 520.0 344 73.3
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 3.7e-145 518.8 389 66.1
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.8e-144 516.5 363 69.1
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 2.4e-144 516.2 344 71.2
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 3.1e-144 515.8 399 65.4
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 3.1e-144 515.8 400 63.2
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 5.4e-144 515.0 327 77.4
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 9.2e-144 514.2 402 64.4
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 1.6e-143 513.5 344 72.1
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.6e-143 513.5 366 69.7
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 2.0e-143 513.1 411 63.5
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 4.5e-143 511.9 376 67.3
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 7.7e-143 511.1 373 67.0
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 1.0e-142 510.8 354 68.9
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 1.0e-142 510.8 346 70.5
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 1.0e-142 510.8 355 68.7
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 1.3e-142 510.4 344 71.2
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.7e-142 510.0 339 72.9
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 2.3e-142 509.6 353 71.7
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 2.9e-142 509.2 344 70.1
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 3.8e-142 508.8 344 70.3
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 3.8e-142 508.8 344 70.3
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 3.8e-142 508.8 345 70.4
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 5.0e-142 508.4 353 69.1
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 5.0e-142 508.4 371 67.4
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 8.6e-142 507.7 356 68.8
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 1.1e-141 507.3 360 67.8
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 1.5e-141 506.9 344 71.8
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 1.9e-141 506.5 371 67.4
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 1.9e-141 506.5 354 69.8
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 3.3e-141 505.8 366 68.6
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 4.3e-141 505.4 354 68.1
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 4.3e-141 505.4 354 68.4
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 7.3e-141 504.6 356 68.8
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 7.3e-141 504.6 363 68.6
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 7.3e-141 504.6 344 69.8
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 9.5e-141 504.2 344 69.8
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 9.5e-141 504.2 375 65.3
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 3.6e-140 502.3 363 67.5
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 4.7e-140 501.9 346 71.7
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 6.1e-140 501.5 344 69.8
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 6.1e-140 501.5 369 67.5
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 1.0e-139 500.7 409 64.5
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 1.4e-139 500.4 344 71.8
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 2.3e-139 499.6 314 75.2
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.5e-138 496.9 381 66.1
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 4.9e-137 491.9 332 71.7
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 1.4e-136 490.3 373 66.0
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.3e-134 483.8 384 63.5
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 6.2e-132 474.9 358 65.1
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 6.8e-131 471.5 350 65.1
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 6.8e-131 471.5 432 57.6
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 2.0e-127 459.9 349 63.9
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 1.3e-126 457.2 314 70.1
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 5.0e-126 455.3 573 46.2
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 6.6e-126 454.9 380 60.5
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.1e-124 449.9 366 62.6
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 2.8e-124 449.5 365 61.4
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.6e-124 449.1 344 65.7
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.3e-121 440.7 344 65.7
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 4.9e-121 438.7 292 72.9
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 3.1e-99 366.3 278 64.7
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.4e-98 362.8 352 56.8
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 4.8e-68 262.7 194 68.0
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 8.8e-62 241.9 147 74.8
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 2.8e-60 236.9 373 40.8
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 6.7e-54 215.7 171 57.9
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 1.4e-46 191.4 187 56.7
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 2.3e-46 190.7 323 39.6
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 7.5e-45 185.7 166 57.2
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 4.0e-38 163.3 112 69.6
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 2.3e-33 147.5 112 65.2
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 2.6e-29 134.0 341 29.6
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 9.8e-29 132.1 81 72.8
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 6.6e-25 119.4 66 81.8
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 1.9e-24 117.9 82 69.5
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.3e-12 78.6 52 69.2
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 1.2e-10 72.0 93 44.1
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 1.3e-09 68.6 41 68.3
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 4.0e-06 57.0 61 47.5


User provided reference genes

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