Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 0.0e+00 1517.3 830 100.0
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 1.2e-200 704.1 780 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 4.4e-198 695.7 762 50.7
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 1.9e-180 637.1 831 46.9
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 1.1e-175 621.3 836 44.7
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 1.4e-175 620.9 846 44.1
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 6.9e-175 618.6 831 45.0
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.5e-174 617.5 828 43.8
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 1.5e-174 617.5 842 44.7
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 4.5e-174 615.9 833 45.4
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 7.6e-174 615.1 841 44.8
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.1e-172 611.3 839 44.1
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 1.4e-172 610.9 804 44.8
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 2.5e-172 610.1 832 43.8
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 3.2e-172 609.8 840 44.6
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 5.5e-172 609.0 843 43.1
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 7.1e-172 608.6 835 45.1
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 2.7e-171 606.7 833 44.5
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 4.6e-171 605.9 876 43.7
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 4.6e-171 605.9 844 44.3
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 6.0e-171 605.5 833 44.4
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 6.0e-171 605.5 829 45.0
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 6.7e-170 602.1 833 44.3
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 6.7e-170 602.1 824 45.0
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 1.9e-169 600.5 828 44.1
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 1.9e-169 600.5 836 44.0
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 1.9e-169 600.5 836 43.7
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 2.5e-169 600.1 828 43.7
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 2.5e-169 600.1 858 43.1
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 2.5e-169 600.1 823 44.8
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 4.3e-169 599.4 841 44.1
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 7.4e-169 598.6 840 42.6
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 7.4e-169 598.6 832 44.0
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 1.6e-168 597.4 840 43.7
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 1.6e-168 597.4 831 43.1
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 2.1e-168 597.0 844 42.7
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 2.8e-168 596.7 830 44.2
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 3.7e-168 596.3 841 43.3
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 6.2e-168 595.5 826 45.3
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 8.2e-168 595.1 847 43.3
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.1e-167 594.7 844 42.9
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 4.0e-167 592.8 827 43.5
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 4.0e-167 592.8 828 44.0
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 6.9e-167 592.0 826 44.3
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 9.0e-167 591.7 827 44.4
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 1.2e-166 591.3 831 44.3
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 1.2e-166 591.3 828 44.1
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 2.0e-166 590.5 840 43.2
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 2.0e-166 590.5 832 45.0
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 3.4e-166 589.7 833 43.1
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 1.0e-165 588.2 826 43.8
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 1.0e-165 588.2 827 43.2
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 1.7e-165 587.4 838 43.4
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 2.2e-165 587.0 827 43.2
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 5.0e-165 585.9 850 42.4
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 6.5e-165 585.5 845 42.8
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 8.4e-165 585.1 826 44.3
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 3.2e-164 583.2 833 43.3
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 5.5e-164 582.4 860 43.3
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 9.3e-164 581.6 839 42.8
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.6e-163 580.9 823 42.9
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 2.1e-163 580.5 839 42.8
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 2.7e-163 580.1 867 42.1
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 3.5e-163 579.7 841 42.4
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 4.6e-163 579.3 843 41.6
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 1.0e-162 578.2 831 43.6
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 5.1e-162 575.9 841 43.8
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 8.7e-162 575.1 831 43.4
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 1.1e-161 574.7 835 42.3
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 1.1e-161 574.7 843 43.3
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 1.9e-161 573.9 837 43.0
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 2.5e-161 573.5 805 43.7
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 2.5e-161 573.5 837 44.1
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 4.3e-161 572.8 778 44.5
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 5.7e-161 572.4 835 43.6
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 1.3e-160 571.2 830 43.1
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.1e-159 568.2 843 41.4
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 1.1e-159 568.2 836 43.1
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 1.4e-159 567.8 827 42.7
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 1.4e-159 567.8 832 42.7
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.8e-159 567.4 866 41.6
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 4.5e-158 562.8 893 40.1
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 4.5e-158 562.8 824 43.4
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 2.9e-157 560.1 844 42.1
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 4.6e-155 552.7 789 43.2
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 4.6e-155 552.7 822 43.1
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 3.0e-154 550.1 840 42.3
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 3.9e-154 549.7 834 41.0
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 9.7e-153 545.0 879 41.8
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.3e-152 544.7 823 43.7
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 6.9e-151 538.9 844 40.9
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 2.0e-150 537.3 865 40.1
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 3.4e-150 536.6 767 42.5
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 1.1e-148 531.6 888 39.1
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 4.2e-148 529.6 935 38.0
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 2.3e-146 523.9 757 41.3
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 6.7e-138 495.7 828 40.6
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.7e-136 491.1 849 39.1
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.1e-127 460.3 691 42.7
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 1.4e-114 418.3 840 37.3
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 1.6e-110 404.8 681 42.3
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 6.4e-104 382.9 382 51.6
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 6.6e-101 372.9 613 39.3
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 2.1e-91 341.3 327 54.7
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 3.3e-84 317.4 636 38.2
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.6e-81 307.8 276 57.2
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.9e-76 291.6 548 37.0
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 1.7e-72 278.5 876 28.9
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.7e-69 268.5 256 55.9
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 3.1e-66 257.7 498 36.1
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.6e-62 245.4 273 45.8
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 5.6e-60 236.9 411 38.4
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 3.7e-59 234.2 434 37.6
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 3.2e-47 194.5 835 26.8
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.6e-43 182.2 316 38.6
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.7e-40 172.2 357 35.3
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 3.0e-37 161.4 240 42.5
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.5e-25 121.3 131 53.4
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 4.7e-22 110.9 99 60.6
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.8e-21 109.0 114 52.6
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.5e-17 94.4 158 36.7
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.5e-15 89.4 96 51.0
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.4e-13 82.8 70 64.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 5.2e-13 80.9 122 36.1
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 6.8e-13 80.5 83 57.8
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 2.6e-12 78.6 215 31.2
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 5.7e-12 77.4 88 44.3
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 5.7e-12 77.4 88 44.3
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 8.5e-08 63.5 114 37.7


User provided reference genes

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