Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.5e-93 344.7 194 100.0
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.1e-22 109.0 84 64.3
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.9e-11 73.6 78 47.4
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 4.3e-11 72.4 67 50.7
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 3.1e-09 66.2 61 55.7
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 6.9e-09 65.1 66 51.5
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 6.9e-09 65.1 68 47.1
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 1.2e-08 64.3 61 52.5
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 1.2e-08 64.3 61 52.5
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 1.5e-08 63.9 60 53.3
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 2.0e-08 63.5 61 52.5
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.0e-08 63.5 62 50.0
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 2.0e-08 63.5 61 52.5
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 2.6e-08 63.2 60 56.7
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 3.4e-08 62.8 60 53.3
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 4.5e-08 62.4 61 52.5
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.5e-08 62.4 60 50.0
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 4.5e-08 62.4 59 49.2
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 5.8e-08 62.0 60 51.7
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 5.8e-08 62.0 60 53.3
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 5.8e-08 62.0 61 52.5
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 7.6e-08 61.6 73 41.1
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 7.6e-08 61.6 61 50.8
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 9.9e-08 61.2 61 50.8
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 9.9e-08 61.2 61 50.8
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 9.9e-08 61.2 67 49.3
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 9.9e-08 61.2 67 49.3
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 9.9e-08 61.2 72 43.1
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 1.3e-07 60.8 64 50.0
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-07 60.8 73 46.6
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 1.3e-07 60.8 60 51.7
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 1.7e-07 60.5 61 55.7
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 1.7e-07 60.5 67 47.8
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.7e-07 60.5 60 51.7
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 1.7e-07 60.5 61 50.8
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 2.2e-07 60.1 60 53.3
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 2.2e-07 60.1 68 48.5
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 2.2e-07 60.1 64 50.0
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.2e-07 60.1 60 50.0
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 2.2e-07 60.1 59 52.5
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.9e-07 59.7 60 50.0
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 2.9e-07 59.7 59 52.5
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 2.9e-07 59.7 61 54.1
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.8e-07 59.3 60 50.0
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 3.8e-07 59.3 60 50.0
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 3.8e-07 59.3 59 52.5
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 4.9e-07 58.9 69 46.4
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 4.9e-07 58.9 69 47.8
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 4.9e-07 58.9 62 53.2
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 4.9e-07 58.9 60 50.0
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 4.9e-07 58.9 61 49.2
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 4.9e-07 58.9 60 51.7
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 6.4e-07 58.5 59 49.2
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 6.4e-07 58.5 64 48.4
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 6.4e-07 58.5 64 48.4
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 6.4e-07 58.5 61 47.5
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 6.4e-07 58.5 70 44.3
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.4e-07 58.5 70 44.3
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 6.4e-07 58.5 67 47.8
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 6.4e-07 58.5 59 50.8
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 6.4e-07 58.5 61 50.8
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 6.4e-07 58.5 60 50.0
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 6.4e-07 58.5 65 52.3
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 8.4e-07 58.2 60 48.3
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 8.4e-07 58.2 60 51.7
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 8.4e-07 58.2 59 49.2
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 8.4e-07 58.2 73 45.2
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 8.4e-07 58.2 60 50.0
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.1e-06 57.8 66 53.0
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 1.1e-06 57.8 69 43.5
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 1.1e-06 57.8 60 46.7
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 1.1e-06 57.8 77 41.6
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 1.1e-06 57.8 60 46.7
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.4e-06 57.4 63 46.0
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 1.4e-06 57.4 60 50.0
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.9e-06 57.0 66 53.0
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.9e-06 57.0 70 44.3
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 1.9e-06 57.0 63 47.6
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 1.9e-06 57.0 77 41.6
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 2.4e-06 56.6 67 47.8
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 2.4e-06 56.6 66 48.5
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.4e-06 56.6 64 45.3
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 3.2e-06 56.2 60 48.3
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 3.2e-06 56.2 59 52.5
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 3.2e-06 56.2 78 39.7
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.2e-06 56.2 58 44.8
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 3.2e-06 56.2 59 49.2
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 4.2e-06 55.8 73 45.2
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 4.2e-06 55.8 64 48.4
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 4.2e-06 55.8 62 53.2
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 4.2e-06 55.8 64 48.4
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 4.2e-06 55.8 61 49.2
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 5.4e-06 55.5 59 47.5
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 5.4e-06 55.5 63 50.8
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 5.4e-06 55.5 61 45.9
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 7.1e-06 55.1 64 50.0
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 7.1e-06 55.1 64 50.0
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 7.1e-06 55.1 60 48.3
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 7.1e-06 55.1 66 50.0
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 9.3e-06 54.7 60 48.3


User provided reference genes

Program Settings