Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_18950 Physcomitrium patens HOM05D005281 ORTHO05D006351 1.5e-264 915.6 446 100.0
Pp3c15_15290 Physcomitrium patens HOM05D005281 ORTHO05D006351 3.6e-29 133.7 214 39.7
Mapoly0033s0127 Marchantia polymorpha HOM05D005281 ORTHO05D006351 8.1e-29 132.5 154 48.1
SEGI_19872 Sequoiadendron giganteum HOM05D005281 ORTHO05D006351 2.1e-21 107.8 167 39.5
CBR_g17683 Chara braunii HOM05D005281 ORTHO05D006351 3.1e-20 104.0 124 48.4
MBI14_g42908_MAGBIO Magnolia biondii HOM05D005281 ORTHO05D006351 4.0e-20 103.6 333 28.8
Actinidia23888 Actinidia chinensis HOM05D005281 ORTHO05D006351 4.9e-18 96.7 227 32.6
GSVIVG01024739001 Vitis vinifera HOM05D005281 ORTHO05D006351 4.9e-18 96.7 368 28.5
CSS0033286 Camellia sinensis var. sinensis HOM05D005281 ORTHO05D006351 2.4e-17 94.4 160 36.2
Aa31LG11G480 Aethionema arabicum HOM05D005281 ORTHO05D006351 3.2e-17 94.0 162 38.3
BcaC03g14078 Brassica carinata HOM05D005281 ORTHO05D006351 4.1e-17 93.6 166 38.0
A02p07560 Brassica napus HOM05D005281 ORTHO05D006351 4.1e-17 93.6 166 38.0
C02p13130 Brassica napus HOM05D005281 ORTHO05D006351 5.4e-17 93.2 188 36.2
BraA02t05834Z Brassica rapa HOM05D005281 ORTHO05D006351 5.4e-17 93.2 188 36.2
A03p12060 Brassica napus HOM05D005281 ORTHO05D006351 9.2e-17 92.4 174 38.5
BraA03t10518Z Brassica rapa HOM05D005281 ORTHO05D006351 9.2e-17 92.4 174 38.5
Medtr3g463770 Medicago truncatula HOM05D005281 ORTHO05D006351 1.6e-16 91.7 178 36.5
Gohir.D07G108000 Gossypium hirsutum HOM05D005281 ORTHO05D006351 2.1e-16 91.3 345 28.7
FAN11G1688 Fragaria x ananassa HOM05D005281 ORTHO05D006351 2.7e-16 90.9 152 38.2
BcaB01g04497 Brassica carinata HOM05D005281 ORTHO05D006351 3.5e-16 90.5 123 43.1
Eucgr.J01912 Eucalyptus grandis HOM05D005281 ORTHO05D006351 4.6e-16 90.1 110 45.5
Cpa.g.sc415.3 Carica papaya HOM05D005281 ORTHO05D006351 6.0e-16 89.7 354 27.1
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 6.0e-16 89.7 113 42.5
Thhalv10013268m.g Eutrema salsugineum HOM05D005281 ORTHO05D006351 6.0e-16 89.7 169 37.3
FvH4_3g38560 Fragaria vesca HOM05D005281 ORTHO05D006351 6.0e-16 89.7 152 37.5
Gorai.001G116100 Gossypium raimondii HOM05D005281 ORTHO05D006351 6.0e-16 89.7 345 28.7
Sabra09G0033500 Salix brachista HOM05D005281 ORTHO05D006351 6.0e-16 89.7 113 46.0
VMungo0540G0631 Vigna mungo HOM05D005281 ORTHO05D006351 6.0e-16 89.7 152 38.8
FAN16G1244 Fragaria x ananassa HOM05D005281 ORTHO05D006351 7.8e-16 89.4 152 37.5
FAN21G2151 Fragaria x ananassa HOM05D005281 ORTHO05D006351 7.8e-16 89.4 152 36.8
FAN25G0418 Fragaria x ananassa HOM05D005281 ORTHO05D006351 7.8e-16 89.4 152 37.5
Gohir.A07G104200 Gossypium hirsutum HOM05D005281 ORTHO05D006351 7.8e-16 89.4 346 28.0
Lalb_Chr18g0050941 Lupinus albus HOM05D005281 ORTHO05D006351 7.8e-16 89.4 153 38.6
BcaB05g22447 Brassica carinata HOM05D005281 ORTHO05D006351 1.0e-15 89.0 153 39.2
MD03G1070600 Malus domestica HOM05D005281 ORTHO05D006351 1.0e-15 89.0 153 37.3
Phvul.006G068100 Phaseolus vulgaris HOM05D005281 ORTHO05D006351 1.3e-15 88.6 152 38.8
Sp6g20410 Schrenkiella parvula HOM05D005281 ORTHO05D006351 1.3e-15 88.6 363 28.9
Aqoxy4G02562 Aquilegia oxysepala HOM05D005281 ORTHO05D006351 1.7e-15 88.2 115 42.6
QL01p038286 Quercus lobata HOM05D005281 ORTHO05D006351 1.7e-15 88.2 113 44.2
Rhsim01G0236400 Rhododendron simsii HOM05D005281 ORTHO05D006351 1.7e-15 88.2 348 27.3
Lj6g0025988 Lotus japonicus HOM05D005281 ORTHO05D006351 2.3e-15 87.8 113 45.1
vmacro14592 Vaccinium macrocarpon HOM05D005281 ORTHO05D006351 2.3e-15 87.8 108 46.3
BcaB01g04640 Brassica carinata HOM05D005281 ORTHO05D006351 3.0e-15 87.4 371 28.8
Ca_14931_v3 Cicer arietinum L. HOM05D005281 ORTHO05D006351 3.0e-15 87.4 173 35.3
CsaV3_6G016220 Cucumis sativus L. HOM05D005281 ORTHO05D006351 3.0e-15 87.4 169 36.1
Oeu045534.1 Olea europaea HOM05D005281 ORTHO05D006351 3.0e-15 87.4 231 29.9
BolC2t07431H Brassica oleracea HOM05D005281 ORTHO05D006351 3.9e-15 87.0 364 28.8
Haze_24325 Corylus avellana HOM05D005281 ORTHO05D006351 3.9e-15 87.0 113 41.6
CANSAT54G2372 Cannabis sativa HOM05D005281 ORTHO05D006351 5.1e-15 86.7 152 36.2
Potri.009G046300 Populus trichocarpa HOM05D005281 ORTHO05D006351 5.1e-15 86.7 346 26.9
TPR.G21171 Trifolium pratense HOM05D005281 ORTHO05D006351 5.1e-15 86.7 163 36.2
C03p14150 Brassica napus HOM05D005281 ORTHO05D006351 6.6e-15 86.3 371 28.6
Psat5g159280 Pisum sativum HOM05D005281 ORTHO05D006351 6.6e-15 86.3 163 35.6
Duzib150G1450 Durio zibethinus HOM05D005281 ORTHO05D006351 8.6e-15 85.9 339 27.7
Glyma.11G175400 Glycine max HOM05D005281 ORTHO05D006351 8.6e-15 85.9 113 46.0
HanXRQChr08g0229401 Helianthus annuus HOM05D005281 ORTHO05D006351 8.6e-15 85.9 156 37.8
Hma1.2p1_0962F.1_g241910 Hydrangea macrophylla HOM05D005281 ORTHO05D006351 8.6e-15 85.9 287 30.0
BolC3t13861H Brassica oleracea HOM05D005281 ORTHO05D006351 1.1e-14 85.5 371 28.6
CiPaw.14G059500 Carya illinoinensis HOM05D005281 ORTHO05D006351 1.1e-14 85.5 110 42.7
Glyma.18G063000 Glycine max HOM05D005281 ORTHO05D006351 1.1e-14 85.5 113 46.0
MD11G1074600 Malus domestica HOM05D005281 ORTHO05D006351 1.1e-14 85.5 355 27.9
Lj1C137G10 Lonicera japonica HOM05D005281 ORTHO05D006351 1.5e-14 85.1 338 27.2
TWI31G0978 Tripterygium wilfordii HOM05D005281 ORTHO05D006351 1.5e-14 85.1 112 42.9
Duzib168G1083 Durio zibethinus HOM05D005281 ORTHO05D006351 1.9e-14 84.7 152 38.2
THA.LOC104799394 Tarenaya hassleriana HOM05D005281 ORTHO05D006351 1.9e-14 84.7 232 31.5
Thecc.09G301700 Theobroma cacao HOM05D005281 ORTHO05D006351 1.9e-14 84.7 348 26.4
AT5G58720 Arabidopsis thaliana HOM05D005281 ORTHO05D006351 2.5e-14 84.3 171 37.4
CiPaw.13G077500 Carya illinoinensis HOM05D005281 ORTHO05D006351 2.5e-14 84.3 113 41.6
Cc01_g14190 Coffea canephora HOM05D005281 ORTHO05D006351 2.5e-14 84.3 155 34.2
Prupe.6G057400 Prunus persica HOM05D005281 ORTHO05D006351 4.3e-14 83.6 153 35.9
CBR_g16822 Chara braunii HOM05D005281 ORTHO05D006351 5.6e-14 83.2 85 49.4
DCAR_007376 Daucus carota HOM05D005281 ORTHO05D006351 5.6e-14 83.2 346 28.6
PGSC0003DMG400004159 Solanum tuberosum HOM05D005281 ORTHO05D006351 5.6e-14 83.2 221 31.2
MELO3C025849.2 Cucumis melo HOM05D005281 ORTHO05D006351 7.3e-14 82.8 114 41.2
TAR633G1154 Trochodendron aralioides HOM05D005281 ORTHO05D006351 7.3e-14 82.8 359 26.5
HPP92_005265 Vanilla planifolia HOM05D005281 ORTHO05D006351 9.6e-14 82.4 110 42.7
arahy.Tifrunner.gnm1.ann1.EQN3LQ Arachis hypogaea HOM05D005281 ORTHO05D006351 1.6e-13 81.6 113 44.2
Ciclev10028198m.g Citrus clementina HOM05D005281 ORTHO05D006351 2.1e-13 81.3 118 39.8
COL.COLO4_19159 Corchorus olitorius HOM05D005281 ORTHO05D006351 2.1e-13 81.3 349 26.6
RcHm_v2.0_Chr5g0069461 Rosa chinensis HOM05D005281 ORTHO05D006351 2.1e-13 81.3 362 26.5
Atru.chr3.4219 Acer truncatum HOM05D005281 ORTHO05D006351 2.8e-13 80.9 351 26.2
arahy.Tifrunner.gnm1.ann1.UVB96A Arachis hypogaea HOM05D005281 ORTHO05D006351 2.8e-13 80.9 113 44.2
EL10Ac7g16168 Beta vulgaris HOM05D005281 ORTHO05D006351 2.8e-13 80.9 110 40.9
Nitab4.5_0005463g0020 Nicotiana tabacum HOM05D005281 ORTHO05D006351 2.8e-13 80.9 173 35.8
Hund04860 Selenicereus undatus HOM05D005281 ORTHO05D006351 6.2e-13 79.7 114 40.4
Nn2g11502 Nelumbo nucifera HOM05D005281 ORTHO05D006351 1.1e-12 79.0 365 27.7
Nitab4.5_0000102g0060 Nicotiana tabacum HOM05D005281 ORTHO05D006351 1.8e-12 78.2 113 41.6
Peaxi162Scf00025g00089 Petunia axillaris HOM05D005281 ORTHO05D006351 1.8e-12 78.2 156 36.5
RcHm_v2.0_Chr7g0203221 Rosa chinensis HOM05D005281 ORTHO05D006351 2.4e-12 77.8 115 42.6
ECA247G0807 Erigeron canadensis HOM05D005281 ORTHO05D006351 3.1e-12 77.4 122 39.3
Zm00001eb119510 Zea mays HOM05D005281 ORTHO05D006351 4.0e-12 77.0 114 40.4
Sc21g0006330 Simmondsia chinensis HOM05D005281 ORTHO05D006351 5.2e-12 76.6 113 38.9
Sopen06g002070 Solanum pennellii HOM05D005281 ORTHO05D006351 5.2e-12 76.6 361 25.2
AUR62001645 Chenopodium quinoa HOM05D005281 ORTHO05D006351 6.8e-12 76.3 114 37.7
CAN.G1213.5 Capsicum annuum HOM05D005281 ORTHO05D006351 8.9e-12 75.9 173 34.1
Sed0014563 Sechium edule HOM05D005281 ORTHO05D006351 8.9e-12 75.9 366 27.0
AUR62020131 Chenopodium quinoa HOM05D005281 ORTHO05D006351 1.2e-11 75.5 114 37.7
Ah.15g100320 Amaranthus hybridus HOM05D005281 ORTHO05D006351 1.5e-11 75.1 113 36.3
SalBow2G0889 Salvia bowleyana HOM05D005281 ORTHO05D006351 1.5e-11 75.1 353 26.1
Migut.N00784 Erythranthe guttata HOM05D005281 ORTHO05D006351 2.6e-11 74.3 348 27.6
SGA_v2.0_scaffold120G32911 Striga asiatica HOM05D005281 ORTHO05D006351 2.6e-11 74.3 345 24.6
AL8G35000 Arabidopsis lyrata HOM05D005281 ORTHO05D006351 6.4e-10 69.7 134 38.1
AagrBONN_evm.TU.Sc2ySwM_228.1724 Anthoceros agrestis HOM05D005281 ORTHO05D006351 1.1e-09 68.9 165 35.2
CARHR272630 Cardamine hirsuta HOM05D005281 ORTHO05D006351 1.4e-09 68.6 91 44.0
FvH4_5g18840 Fragaria vesca HOM05D005281 ORTHO05D006351 1.4e-09 68.6 170 31.2
FAN18G1830 Fragaria x ananassa HOM05D005281 ORTHO05D006351 1.4e-09 68.6 166 31.9
ATR0680G131 Amborella trichopoda HOM05D004205 ORTHO05D004977 2.4e-09 67.8 162 29.0
FAN18G0195 Fragaria x ananassa HOM05D005281 ORTHO05D006351 2.4e-09 67.8 170 31.2
RcHm_v2.0_Chr7g0203081 Rosa chinensis HOM05D005281 ORTHO05D006351 4.2e-09 67.0 114 38.6
PSO339G3076 Papaver somniferum HOM05D005281 ORTHO05D006351 7.1e-09 66.2 115 36.5
PSO408G0002 Papaver somniferum HOM05D005281 ORTHO05D006351 7.1e-09 66.2 115 36.5
FAN04G2173 Fragaria x ananassa HOM05D005281 ORTHO05D006351 2.7e-08 64.3 115 40.0
Lsat_1_v5_gn_9_20081 Lactuca sativa HOM05D005281 ORTHO05D006351 2.7e-08 64.3 343 25.9
FAN08G2328 Fragaria x ananassa HOM05D005281 ORTHO05D006351 3.5e-08 63.9 115 40.0
FAN18G1833 Fragaria x ananassa HOM05D005281 ORTHO05D006351 6.0e-08 63.2 115 39.1
Zm00001eb126060 Zea mays HOM05D000188 ORTHO05D006351 7.8e-08 62.8 108 36.1
Zm00001eb196370 Zea mays HOM05D005281 ORTHO05D006351 7.8e-08 62.8 108 36.1
Manes.01G161500 Manihot esculenta HOM05D005281 ORTHO05D006351 1.3e-07 62.0 331 26.3
Lsat_1_v5_gn_7_60661 Lactuca sativa HOM05D005281 ORTHO05D006351 1.1e-06 58.9 84 46.4
Eucgr.E03316 Eucalyptus grandis HOM05D004205 ORTHO05D004977 1.9e-06 58.2 345 23.8
Solyc07g063240.4 Solanum lycopersicum HOM05D004205 ORTHO05D004977 7.3e-06 56.2 163 27.0


User provided reference genes

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