Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 0.0e+00 1197.6 882 100.0
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 4.8e-134 483.0 686 49.1
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.0e-43 183.0 211 48.8
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 4.3e-42 177.6 239 43.1
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 1.5e-39 169.1 200 44.5
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 7.4e-34 150.2 220 38.6
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.3e-33 149.4 211 36.0
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 1.8e-32 145.6 230 34.3
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 3.1e-32 144.8 215 33.0
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.5e-31 142.5 247 33.6
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 2.0e-31 142.1 219 33.8
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 3.4e-31 141.4 213 34.7
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 3.4e-31 141.4 218 34.9
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.4e-31 141.4 218 34.9
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 3.4e-31 141.4 218 34.4
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 4.5e-31 141.0 207 33.8
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 4.5e-31 141.0 219 35.6
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 5.8e-31 140.6 218 34.4
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 7.6e-31 140.2 238 32.4
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 1.0e-30 139.8 218 33.9
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.0e-30 139.8 218 33.5
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 1.0e-30 139.8 211 34.1
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.3e-30 139.4 218 32.6
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.2e-30 138.7 218 33.0
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 3.8e-30 137.9 215 32.6
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 3.8e-30 137.9 215 33.0
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 3.8e-30 137.9 211 36.0
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.8e-30 137.9 218 32.1
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 3.8e-30 137.9 218 33.9
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 4.9e-30 137.5 218 32.6
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 4.9e-30 137.5 215 31.2
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 4.9e-30 137.5 218 33.9
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 6.5e-30 137.1 218 33.5
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 8.4e-30 136.7 218 33.5
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 8.4e-30 136.7 218 32.1
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 8.4e-30 136.7 230 31.7
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 8.4e-30 136.7 218 32.6
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 8.4e-30 136.7 218 32.1
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 8.4e-30 136.7 218 32.6
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 8.4e-30 136.7 218 32.6
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.1e-29 136.3 218 32.6
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 1.4e-29 136.0 238 31.1
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 1.4e-29 136.0 218 32.6
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 1.4e-29 136.0 218 32.6
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.4e-29 136.0 218 32.6
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.4e-29 136.0 218 32.6
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 1.4e-29 136.0 218 32.6
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.4e-29 136.0 218 32.6
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.4e-29 136.0 215 31.6
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 1.4e-29 136.0 218 33.0
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.4e-29 136.0 215 32.6
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.5e-29 135.2 255 30.6
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 2.5e-29 135.2 218 32.6
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 2.5e-29 135.2 215 33.0
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 2.5e-29 135.2 218 33.5
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 2.5e-29 135.2 262 31.7
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 3.2e-29 134.8 218 33.0
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 3.2e-29 134.8 218 31.7
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 4.2e-29 134.4 238 30.7
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 4.2e-29 134.4 218 33.0
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 5.5e-29 134.0 218 33.9
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 5.5e-29 134.0 259 29.7
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 5.5e-29 134.0 209 32.1
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 5.5e-29 134.0 211 32.2
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 5.5e-29 134.0 215 32.1
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 5.5e-29 134.0 201 35.8
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 7.1e-29 133.7 205 33.2
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 7.1e-29 133.7 218 31.7
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 9.3e-29 133.3 225 31.6
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 9.3e-29 133.3 239 31.4
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 9.3e-29 133.3 279 29.7
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.2e-28 132.9 297 28.6
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 1.6e-28 132.5 218 32.1
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 1.6e-28 132.5 221 32.1
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 1.6e-28 132.5 215 31.6
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 2.1e-28 132.1 299 28.1
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 2.7e-28 131.7 218 31.7
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.7e-28 131.7 211 29.9
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 3.5e-28 131.3 280 29.6
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 3.5e-28 131.3 211 31.8
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 4.6e-28 131.0 219 32.4
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 4.6e-28 131.0 219 32.4
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 6.0e-28 130.6 219 32.4
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 6.0e-28 130.6 219 32.4
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 6.0e-28 130.6 219 32.4
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 6.0e-28 130.6 218 32.1
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 6.0e-28 130.6 215 31.6
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 6.0e-28 130.6 211 31.8
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 7.9e-28 130.2 212 31.6
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 7.9e-28 130.2 215 31.2
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.0e-27 129.8 187 35.8
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 1.0e-27 129.8 218 33.0
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.3e-27 129.4 218 31.7
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.8e-27 129.0 207 31.4
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 2.3e-27 128.6 218 31.7
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.3e-27 128.6 211 30.8
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.3e-27 128.6 207 31.4
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.3e-27 128.6 207 31.4
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.0e-27 128.3 211 30.8
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 3.0e-27 128.3 205 31.2
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 6.7e-27 127.1 205 31.7
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 8.7e-27 126.7 205 32.7
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 8.7e-27 126.7 211 30.8
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 8.7e-27 126.7 283 28.6
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 8.7e-27 126.7 209 34.0
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.1e-26 126.3 216 30.6
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.1e-26 126.3 205 31.2
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.1e-26 126.3 218 32.6
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 1.9e-26 125.6 207 33.3
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.9e-26 125.6 211 30.3
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 2.5e-26 125.2 205 30.7
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.5e-26 125.2 215 30.2
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 3.3e-26 124.8 205 30.7
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 3.3e-26 124.8 218 32.1
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 3.3e-26 124.8 220 31.8
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.3e-26 124.4 215 30.2
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 5.7e-26 124.0 220 31.8
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 9.7e-26 123.2 211 28.4
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.3e-25 122.9 218 30.7
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.3e-25 122.9 218 31.2
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 1.3e-25 122.9 197 31.5
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.6e-25 122.5 303 27.4
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 8.2e-25 120.2 200 30.0
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.1e-24 119.8 214 30.4
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.8e-24 119.0 325 29.8
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 3.1e-24 118.2 232 32.8
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 5.3e-24 117.5 210 30.5
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 6.9e-24 117.1 219 33.3
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.2e-23 116.3 279 30.5
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 7.2e-21 107.1 215 29.8
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.4e-16 92.8 205 33.2
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 2.5e-13 82.0 145 33.1
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 4.2e-13 81.3 197 30.5
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 3.7e-09 68.2 109 35.8
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.3e-06 59.7 94 30.9
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.3e-06 59.7 74 41.9


User provided reference genes

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