Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 0.0e+00 1137.9 687 100.0
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 1.2e-172 610.9 467 62.5
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 8.5e-171 604.7 465 60.9
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 2.5e-162 576.6 431 60.3
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 1.6e-161 573.9 469 57.4
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 3.6e-161 572.8 439 59.7
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 3.6e-161 572.8 466 57.5
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 3.6e-161 572.8 436 58.0
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 4.7e-161 572.4 465 56.3
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 6.1e-161 572.0 439 58.5
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 1.2e-159 567.8 433 59.8
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 1.5e-159 567.4 469 56.5
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 3.4e-159 566.2 460 57.2
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 5.7e-159 565.5 461 57.0
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 5.7e-159 565.5 439 58.3
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 5.7e-159 565.5 467 56.1
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 7.5e-159 565.1 439 59.0
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 9.8e-159 564.7 469 57.1
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 1.3e-158 564.3 461 57.0
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 2.2e-158 563.5 463 55.7
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 8.3e-158 561.6 433 58.0
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 1.1e-157 561.2 451 57.2
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 1.4e-157 560.8 461 55.7
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 4.1e-157 559.3 468 53.8
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 4.1e-157 559.3 439 57.4
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 7.0e-157 558.5 460 60.4
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 9.1e-157 558.1 467 55.9
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 1.2e-156 557.8 439 56.7
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.2e-156 557.8 442 57.2
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 1.6e-156 557.4 426 58.5
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 3.5e-156 556.2 444 58.1
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 3.5e-156 556.2 437 59.5
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 3.5e-156 556.2 439 56.9
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 4.5e-156 555.8 468 55.8
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 5.9e-156 555.4 429 58.7
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 7.7e-156 555.1 439 57.4
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 7.7e-156 555.1 426 57.7
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 1.0e-155 554.7 439 57.2
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 1.3e-155 554.3 469 56.5
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 1.7e-155 553.9 489 54.6
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 1.7e-155 553.9 466 55.6
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 2.9e-155 553.1 464 55.0
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 1.5e-154 550.8 469 56.5
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 1.9e-154 550.4 437 57.4
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 3.3e-154 549.7 467 53.7
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 4.2e-154 549.3 469 55.0
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 9.5e-154 548.1 439 56.0
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 2.8e-153 546.6 422 58.8
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 6.1e-153 545.4 437 55.6
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 1.4e-152 544.3 453 56.1
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 1.4e-152 544.3 439 56.3
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 6.8e-152 542.0 467 54.2
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 1.5e-151 540.8 428 57.2
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 2.0e-151 540.4 437 55.1
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 2.6e-151 540.0 473 52.9
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 2.6e-151 540.0 475 52.2
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 7.5e-151 538.5 440 55.2
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 1.3e-150 537.7 428 57.2
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 1.7e-150 537.3 435 61.4
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 2.2e-150 537.0 469 53.7
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 2.9e-150 536.6 435 60.9
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 2.9e-150 536.6 434 55.1
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 3.7e-150 536.2 437 61.1
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 3.7e-150 536.2 437 61.1
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 6.4e-150 535.4 441 54.9
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 8.3e-150 535.0 468 53.4
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 1.1e-149 534.6 462 58.9
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 1.1e-149 534.6 461 59.0
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 2.4e-149 533.5 437 60.9
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 3.2e-149 533.1 437 60.6
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 9.2e-149 531.6 462 58.4
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 1.2e-148 531.2 509 50.5
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 1.2e-148 531.2 509 50.5
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 2.0e-148 530.4 464 54.1
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 2.7e-148 530.0 435 54.5
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 7.8e-148 528.5 439 55.4
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 1.0e-147 528.1 436 57.8
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 1.0e-147 528.1 443 55.8
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 3.0e-147 526.6 428 55.8
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 5.0e-147 525.8 461 53.8
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 1.1e-146 524.6 439 55.1
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 1.9e-146 523.9 430 55.6
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 4.3e-146 522.7 486 50.4
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 3.6e-145 519.6 435 59.5
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 1.8e-144 517.3 440 52.3
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 4.0e-144 516.2 404 57.4
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 2.6e-143 513.5 446 54.3
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 4.6e-140 502.7 523 47.4
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 5.0e-139 499.2 443 52.1
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 8.6e-139 498.4 439 52.6
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.9e-138 497.3 457 51.4
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 3.3e-138 496.5 429 54.3
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 4.7e-137 492.7 457 51.4
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 5.4e-133 479.2 464 48.1
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 9.2e-133 478.4 422 51.7
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.8e-129 466.8 464 48.5
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 3.6e-129 466.5 444 49.3
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 4.0e-120 436.4 437 47.8
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 7.1e-109 399.1 313 55.0
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 1.3e-105 388.3 434 45.9
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 4.5e-103 379.8 439 43.7
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 6.0e-92 342.8 463 40.2
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.7e-76 290.8 208 61.5
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 5.0e-62 243.4 467 33.6
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 6.8e-43 179.9 161 49.7
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 3.0e-35 154.5 126 56.3
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 7.5e-34 149.8 272 33.8
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 1.7e-33 148.7 148 45.3
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 2.6e-26 124.8 199 34.7
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 4.9e-25 120.6 165 43.6
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 1.1e-24 119.4 148 43.9
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 9.2e-24 116.3 148 43.2
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 2.0e-23 115.2 75 68.0
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.7e-23 114.8 93 54.8
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.0e-18 98.6 104 39.4
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 5.8e-18 97.1 61 65.6
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 7.8e-15 86.7 357 24.1
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 1.7e-14 85.5 336 23.8
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 5.1e-14 84.0 331 23.6
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 5.1e-14 84.0 334 22.8
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.5e-13 82.4 333 23.7
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 2.5e-13 81.6 338 22.8
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 1.6e-12 79.0 333 24.3
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 2.1e-12 78.6 263 25.1
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 2.8e-12 78.2 260 25.4
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 6.2e-12 77.0 335 23.9
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 8.1e-12 76.6 228 24.6
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 8.1e-12 76.6 256 25.8
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 1.4e-11 75.9 327 23.5
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 2.3e-11 75.1 333 24.0
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.1e-11 74.7 220 27.7
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 4.0e-11 74.3 220 27.3
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 8.9e-11 73.2 337 23.7
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 1.2e-10 72.8 169 29.6
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.5e-10 72.4 336 24.1
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 2.0e-10 72.0 222 28.4
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 4.4e-10 70.9 221 27.6
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 5.8e-10 70.5 226 26.5
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 7.6e-10 70.1 226 27.0
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 7.6e-10 70.1 226 27.0
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 7.6e-10 70.1 255 23.9
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 9.9e-10 69.7 258 25.2
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 9.9e-10 69.7 172 30.2
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 1.3e-09 69.3 174 28.2
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.7e-09 68.9 186 28.0
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 1.7e-09 68.9 130 31.5
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 2.2e-09 68.6 176 28.4
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 2.9e-09 68.2 255 24.3
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 2.9e-09 68.2 142 29.6
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.9e-09 68.2 169 28.4
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 8.4e-09 66.6 197 26.9
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 8.4e-09 66.6 206 25.7
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.4e-08 65.9 50 52.0
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 3.2e-08 64.7 37 62.2
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 3.2e-08 64.7 199 26.6
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 4.1e-08 64.3 169 29.0
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 4.1e-08 64.3 255 24.3
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 7.1e-08 63.5 257 23.7
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.6e-07 62.4 130 28.5
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 3.5e-07 61.2 169 27.8
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 6.0e-07 60.5 141 27.7
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 1.0e-06 59.7 209 26.3
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.0e-06 59.7 218 27.1
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 1.0e-06 59.7 151 28.5
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.0e-06 59.7 186 26.9
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.0e-06 59.7 151 28.5
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.3e-06 59.3 205 24.9
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 2.3e-06 58.5 169 26.6
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 3.0e-06 58.2 94 34.0
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 6.6e-06 57.0 50 50.0


User provided reference genes

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