Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.4e-218 762.7 393 100.0
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 5.6e-183 644.4 393 84.7
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.3e-168 595.9 392 76.5
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.5e-127 460.3 393 60.6
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 5.2e-96 355.5 386 51.0
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 7.2e-82 308.5 382 44.8
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.5e-63 247.7 325 42.2
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 3.4e-63 246.5 381 36.0
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.9e-62 242.7 378 39.9
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 1.4e-61 241.1 374 39.3
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 3.5e-60 236.5 374 39.3
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 3.0e-59 233.4 376 40.4
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 7.3e-58 228.8 374 37.7
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 1.6e-57 227.6 383 36.8
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.6e-57 227.6 316 42.4
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 3.6e-57 226.5 374 38.8
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.4e-56 224.6 379 38.3
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 3.1e-56 223.4 374 38.0
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.0e-56 223.0 374 38.2
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 4.0e-56 223.0 377 39.3
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 4.0e-56 223.0 375 38.9
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.8e-56 222.2 374 38.0
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 6.8e-56 222.2 372 37.1
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 8.9e-56 221.9 376 35.9
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 8.9e-56 221.9 374 36.4
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 8.9e-56 221.9 374 38.5
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 1.5e-55 221.1 373 38.9
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.0e-55 220.7 377 38.2
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 4.4e-55 219.5 376 37.2
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.4e-55 219.5 377 37.9
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.8e-55 219.2 377 37.9
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 7.5e-55 218.8 374 36.6
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 7.5e-55 218.8 376 36.4
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 9.8e-55 218.4 376 38.0
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 9.8e-55 218.4 317 40.4
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.3e-54 218.0 375 35.5
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.3e-54 218.0 376 35.4
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.7e-54 216.5 388 35.1
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 4.9e-54 216.1 378 38.1
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 8.3e-54 215.3 380 37.4
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 8.3e-54 215.3 377 38.5
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 1.4e-53 214.5 377 38.2
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 1.4e-53 214.5 375 35.7
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 1.4e-53 214.5 373 35.4
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.9e-53 214.2 372 36.8
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.9e-53 214.2 390 36.2
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 2.4e-53 213.8 375 37.1
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 3.2e-53 213.4 376 35.1
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 5.4e-53 212.6 375 36.8
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 7.0e-53 212.2 414 33.3
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 7.0e-53 212.2 377 37.7
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.6e-52 211.1 328 39.9
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.6e-52 211.1 379 35.4
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 2.7e-52 210.3 378 36.0
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 3.5e-52 209.9 375 36.3
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 4.6e-52 209.5 379 38.3
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.0e-51 208.4 376 35.6
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.0e-51 208.4 376 35.6
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.3e-51 208.0 375 35.7
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 1.7e-51 207.6 379 36.9
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 1.7e-51 207.6 376 35.9
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 3.9e-51 206.5 376 34.6
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 3.9e-51 206.5 382 35.6
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.6e-51 205.7 319 37.6
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.5e-50 204.5 376 35.6
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.9e-50 204.1 377 37.9
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 4.3e-50 203.0 374 35.0
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.6e-50 202.6 380 35.5
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.6e-50 202.6 381 35.2
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 7.3e-50 202.2 380 36.3
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 9.5e-50 201.8 379 34.6
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.6e-49 201.1 376 34.8
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.1e-49 200.7 381 35.2
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 3.6e-49 199.9 375 34.4
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 8.1e-49 198.7 375 35.7
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 8.1e-49 198.7 374 34.8
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.1e-48 198.4 378 34.7
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.8e-48 197.6 383 35.0
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.8e-48 197.6 388 35.3
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 1.8e-48 197.6 375 36.8
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 2.3e-48 197.2 408 33.1
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 3.1e-48 196.8 386 33.4
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 4.0e-48 196.4 421 33.5
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 1.2e-47 194.9 380 34.5
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.2e-47 194.9 374 35.0
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.2e-47 194.9 377 35.3
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.5e-47 194.5 378 37.0
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 1.5e-47 194.5 376 33.8
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.0e-47 194.1 373 35.4
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 4.4e-47 193.0 376 33.5
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 7.5e-47 192.2 375 34.1
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 9.9e-47 191.8 380 34.2
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 2.2e-46 190.7 377 34.0
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.2e-46 190.7 373 35.1
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 3.7e-46 189.9 376 34.3
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 3.7e-46 189.9 374 34.0
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 3.7e-46 189.9 319 36.7
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.7e-46 189.9 381 35.2
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 4.9e-46 189.5 381 33.1
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 6.4e-46 189.1 379 35.1
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 8.3e-46 188.7 381 34.4
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.1e-45 188.3 380 33.4
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.1e-45 188.3 379 34.8
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 1.4e-45 188.0 380 33.7
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.4e-45 187.2 373 33.2
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.4e-45 187.2 321 37.1
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 3.2e-45 186.8 381 33.1
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 3.2e-45 186.8 378 33.6
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 4.1e-45 186.4 376 33.8
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 4.1e-45 186.4 373 33.8
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 4.1e-45 186.4 379 34.6
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 7.1e-45 185.7 384 33.6
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 7.1e-45 185.7 319 37.3
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 7.1e-45 185.7 359 34.5
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 9.2e-45 185.3 374 34.0
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 1.2e-44 184.9 373 33.5
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.6e-44 184.5 385 33.2
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 2.7e-44 183.7 323 36.5
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 4.6e-44 183.0 386 34.7
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 7.8e-44 182.2 370 34.9
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.0e-43 181.8 391 32.2
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.3e-43 181.4 317 36.3
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 2.3e-43 180.6 379 33.5
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 3.9e-43 179.9 381 32.8
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.1e-42 178.3 299 36.8
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 1.5e-42 177.9 407 31.4
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 3.3e-42 176.8 412 31.1
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 4.3e-42 176.4 375 31.7
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 9.5e-42 175.3 291 37.8
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.2e-41 174.9 364 33.2
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 4.7e-41 172.9 389 31.6
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 6.2e-41 172.6 293 37.2
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 6.8e-40 169.1 323 34.7
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.0e-39 167.5 374 31.6
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 2.0e-39 167.5 374 31.8
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 2.2e-38 164.1 375 31.5
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 3.8e-38 163.3 245 39.2
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.1e-34 151.8 494 27.9
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 2.1e-33 147.5 516 26.6
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 9.0e-32 142.1 488 26.8
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.5e-31 141.4 314 33.8
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 2.9e-30 137.1 211 37.4
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 5.4e-29 132.9 317 31.9
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.0e-27 128.6 160 45.0
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.0e-27 128.6 231 36.4
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.0e-27 127.1 158 45.6
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.0e-27 127.1 160 44.4
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 8.7e-27 125.6 160 43.8
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 8.7e-27 125.6 215 37.2
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.9e-26 124.4 160 43.1
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.9e-26 124.4 214 36.0
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.9e-26 124.4 568 24.5
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 7.3e-26 122.5 217 37.8
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-24 118.2 161 41.0
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.8e-24 117.9 197 38.1
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 2.4e-24 117.5 169 42.0
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.1e-24 117.1 197 38.1
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.1e-24 117.1 155 41.3
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 9.0e-24 115.5 162 39.5
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 9.9e-23 112.1 259 30.1
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 3.8e-22 110.2 196 38.3
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.4e-22 109.4 102 52.0
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 7.1e-21 105.9 160 40.0
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 2.7e-20 104.0 300 29.7
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 1.8e-16 91.3 196 33.2
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 4.0e-16 90.1 165 40.0
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.9e-16 89.4 208 33.7
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.0e-15 87.8 173 31.8
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.6e-15 87.4 150 34.7
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.8e-15 86.3 123 41.5
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 2.9e-14 84.0 166 31.9
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 3.8e-14 83.6 124 41.1
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 8.4e-14 82.4 135 32.6
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 3.5e-12 77.0 135 37.0
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 1.3e-11 75.1 134 33.6
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 4.3e-10 70.1 132 33.3
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 1.5e-07 61.6 375 23.7
Cre14.g618450 Chlamydomonas reinhardtii HOM05D002209 ORTHO05D139534 4.9e-06 56.6 355 23.4


User provided reference genes

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