Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 3.9e-162 574.7 287 100.0
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 5.6e-100 368.2 286 64.3
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 2.7e-86 322.8 284 59.2
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 3.5e-86 322.4 284 58.8
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 3.5e-86 322.4 274 58.0
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 1.3e-85 320.5 284 57.0
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 1.3e-85 320.5 284 58.5
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 1.3e-85 320.5 285 58.2
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 1.3e-85 320.5 285 57.9
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 1.8e-85 320.1 283 55.1
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 3.9e-85 318.9 287 58.2
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 3.9e-85 318.9 284 57.0
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 5.1e-85 318.5 283 56.5
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 6.7e-85 318.2 284 56.3
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 1.1e-84 317.4 283 58.0
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 1.1e-84 317.4 283 57.2
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.1e-84 317.4 284 55.3
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 1.5e-84 317.0 287 57.8
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 3.3e-84 315.8 283 56.5
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 3.3e-84 315.8 284 55.3
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 3.3e-84 315.8 283 58.7
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 3.3e-84 315.8 283 57.6
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 3.3e-84 315.8 283 57.2
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 5.6e-84 315.1 283 57.2
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 7.4e-84 314.7 284 57.4
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 7.4e-84 314.7 283 55.5
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 9.6e-84 314.3 275 57.8
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 9.6e-84 314.3 283 55.1
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 9.6e-84 314.3 284 57.4
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 9.6e-84 314.3 284 57.7
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 9.6e-84 314.3 287 56.8
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 1.3e-83 313.9 283 55.8
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 1.3e-83 313.9 285 54.7
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.3e-83 313.9 284 57.0
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 1.6e-83 313.5 284 57.7
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 2.8e-83 312.8 283 56.2
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 3.7e-83 312.4 283 57.6
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 4.8e-83 312.0 283 54.8
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 6.2e-83 311.6 283 56.5
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 6.2e-83 311.6 285 56.8
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 6.2e-83 311.6 284 56.7
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 6.2e-83 311.6 285 55.8
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 8.1e-83 311.2 284 56.7
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 8.1e-83 311.2 284 55.6
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 8.1e-83 311.2 284 56.0
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 8.1e-83 311.2 285 56.1
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 1.1e-82 310.8 283 55.8
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 1.1e-82 310.8 283 55.8
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 1.8e-82 310.1 284 56.0
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 1.8e-82 310.1 283 56.5
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 2.4e-82 309.7 287 56.4
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 4.0e-82 308.9 283 55.5
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 4.0e-82 308.9 275 58.2
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 6.9e-82 308.1 285 55.8
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 6.9e-82 308.1 285 55.8
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 9.0e-82 307.8 284 54.6
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 9.0e-82 307.8 283 56.2
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 1.2e-81 307.4 284 55.3
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 1.5e-81 307.0 283 55.1
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 1.5e-81 307.0 284 57.4
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 4.5e-81 305.4 274 58.0
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 5.8e-81 305.1 286 56.3
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 5.8e-81 305.1 275 57.1
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 5.8e-81 305.1 283 55.5
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 5.8e-81 305.1 284 55.3
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 7.6e-81 304.7 283 54.8
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 7.6e-81 304.7 283 54.8
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 7.6e-81 304.7 283 55.8
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 7.6e-81 304.7 285 55.1
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 1.3e-80 303.9 287 54.0
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 1.7e-80 303.5 287 55.7
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 1.7e-80 303.5 283 56.9
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 2.2e-80 303.1 322 50.0
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 2.9e-80 302.8 283 55.8
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 4.9e-80 302.0 278 56.5
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 4.9e-80 302.0 286 55.9
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 6.4e-80 301.6 274 56.9
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 6.4e-80 301.6 283 56.2
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 6.4e-80 301.6 277 56.0
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 6.4e-80 301.6 307 52.4
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 8.4e-80 301.2 283 55.1
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 1.4e-79 300.4 284 54.9
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 1.4e-79 300.4 296 53.4
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 1.4e-79 300.4 283 54.8
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.9e-79 300.1 304 53.3
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 3.2e-79 299.3 275 54.9
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 3.2e-79 299.3 294 54.8
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 4.2e-79 298.9 284 56.0
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 7.1e-79 298.1 292 53.8
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 1.2e-78 297.4 284 54.6
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 1.2e-78 297.4 275 55.6
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 3.5e-78 295.8 309 53.4
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 3.0e-77 292.7 284 53.5
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 6.7e-77 291.6 297 52.9
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 1.1e-76 290.8 275 54.9
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 3.3e-76 289.3 302 52.0
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 3.3e-76 289.3 275 57.1
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 3.3e-76 289.3 320 50.6
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 1.6e-75 287.0 285 54.4
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 2.1e-75 286.6 284 53.9
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 3.7e-75 285.8 284 54.2
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 1.0e-72 277.7 283 52.3
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 1.7e-72 276.9 216 61.1
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 1.1e-71 274.2 218 64.7
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 1.1e-71 274.2 226 60.6
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 3.9e-69 265.8 284 52.8
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 1.2e-65 254.2 285 49.1
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 1.0e-64 251.1 206 60.7
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 1.7e-64 250.4 275 51.3
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 4.2e-63 245.7 351 41.3
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 1.6e-62 243.8 276 48.6
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 1.0e-61 241.1 274 49.3
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 3.4e-57 226.1 266 49.2
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 1.7e-56 223.8 220 55.5
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.2e-56 223.4 204 56.9
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 3.2e-55 219.5 210 56.2
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 1.0e-53 214.5 184 58.7
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.7e-51 207.2 303 36.6
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 2.4e-50 203.4 208 52.4
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 2.0e-49 200.3 206 51.5
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 4.2e-47 192.6 164 59.1
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 1.2e-46 191.0 297 40.7
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 1.4e-45 187.6 210 51.9
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 5.2e-45 185.7 167 59.3
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 3.3e-44 183.0 207 47.3
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.6e-41 174.1 204 47.1
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 2.9e-40 169.9 164 55.5
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 9.4e-39 164.9 143 57.3
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 4.7e-38 162.5 305 35.7
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 2.3e-37 160.2 275 34.9
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.2e-36 157.9 129 62.0
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 2.7e-33 146.7 164 48.2
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 2.9e-32 143.3 286 34.6
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 2.5e-31 140.2 222 39.2
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 7.2e-31 138.7 327 30.0
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 8.6e-24 115.2 79 69.6
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 1.9e-23 114.0 79 64.6
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 2.5e-23 113.6 79 68.4
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.2e-22 111.3 104 55.8
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 2.9e-16 90.1 100 45.0
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 8.6e-16 88.6 105 47.6
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 6.1e-14 82.4 91 46.2
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 7.5e-12 75.5 79 50.6
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.2e-09 68.2 205 28.3
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 5.6e-07 59.3 76 43.4


User provided reference genes

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