Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 4.9e-131 471.1 228 100.0
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 4.5e-52 208.8 176 52.3
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 5.9e-52 208.4 176 52.3
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 1.0e-51 207.6 176 52.3
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 3.8e-51 205.7 176 51.1
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 1.5e-50 203.8 176 50.6
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 1.5e-50 203.8 176 51.7
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 5.5e-50 201.8 176 49.4
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 9.4e-50 201.1 188 49.5
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 2.1e-49 199.9 176 51.7
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 6.1e-49 198.4 175 52.0
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 1.8e-48 196.8 189 49.7
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 2.3e-48 196.4 189 47.6
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 4.0e-48 195.7 189 49.7
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 6.8e-48 194.9 176 50.6
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 8.8e-48 194.5 177 48.0
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 8.8e-48 194.5 177 51.4
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 8.8e-48 194.5 190 47.9
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 1.5e-47 193.7 190 48.4
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 4.4e-47 192.2 191 49.2
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 4.4e-47 192.2 191 48.2
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 7.5e-47 191.4 176 50.0
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 9.8e-47 191.0 177 50.8
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 9.8e-47 191.0 175 48.0
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 9.8e-47 191.0 189 47.1
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 9.8e-47 191.0 177 49.7
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 1.3e-46 190.7 166 50.6
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 1.3e-46 190.7 174 48.9
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 2.2e-46 189.9 189 49.7
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 2.8e-46 189.5 190 49.5
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 2.8e-46 189.5 190 48.9
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 2.8e-46 189.5 190 48.9
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 2.8e-46 189.5 182 48.4
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 3.7e-46 189.1 178 50.6
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 4.8e-46 188.7 175 48.0
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 6.3e-46 188.3 191 45.5
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 8.3e-46 188.0 188 45.7
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 1.1e-45 187.6 176 49.4
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 1.1e-45 187.6 189 46.0
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 1.1e-45 187.6 189 47.1
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 1.8e-45 186.8 191 48.2
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 1.8e-45 186.8 175 46.3
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 3.1e-45 186.0 175 46.3
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 3.1e-45 186.0 189 49.2
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 3.1e-45 186.0 189 49.2
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 4.1e-45 185.7 191 47.1
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 4.1e-45 185.7 176 47.2
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 5.4e-45 185.3 176 47.7
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 5.4e-45 185.3 175 50.9
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 7.0e-45 184.9 175 50.3
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 7.0e-45 184.9 190 45.8
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 9.1e-45 184.5 176 47.7
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.2e-44 184.1 190 47.9
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 2.0e-44 183.3 180 46.7
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 2.7e-44 183.0 183 45.9
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 4.5e-44 182.2 195 46.7
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 5.9e-44 181.8 183 49.2
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 7.7e-44 181.4 182 48.4
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.3e-43 180.6 194 44.8
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 1.7e-43 180.3 183 45.9
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 2.9e-43 179.5 195 45.6
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 5.0e-43 178.7 188 44.1
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 6.5e-43 178.3 194 45.4
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 1.1e-42 177.6 175 48.0
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 1.5e-42 177.2 194 44.3
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 1.9e-42 176.8 179 45.8
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 3.2e-42 176.0 193 45.1
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 3.2e-42 176.0 179 47.5
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 4.2e-42 175.6 195 43.1
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 4.2e-42 175.6 189 43.4
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 5.5e-42 175.3 189 43.4
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 5.5e-42 175.3 180 48.3
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 9.4e-42 174.5 163 47.2
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 1.2e-41 174.1 179 46.9
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 2.1e-41 173.3 177 45.8
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 2.7e-41 172.9 178 45.5
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 8.0e-41 171.4 183 47.0
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 8.0e-41 171.4 190 43.7
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 1.0e-40 171.0 160 48.1
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 1.8e-40 170.2 169 47.9
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 1.8e-40 170.2 169 47.9
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 5.2e-40 168.7 175 47.4
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 5.2e-40 168.7 177 45.2
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 6.8e-40 168.3 178 47.2
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 3.4e-39 166.0 192 43.2
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 3.4e-39 166.0 161 48.4
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 7.5e-39 164.9 161 48.4
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 9.8e-39 164.5 138 52.2
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 9.8e-39 164.5 194 43.3
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 3.7e-38 162.5 178 42.1
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 6.3e-38 161.8 165 45.5
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 1.1e-37 161.0 161 44.7
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 1.8e-37 160.2 206 40.8
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 2.3e-35 153.3 190 40.5
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 1.1e-34 151.0 160 43.8
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 5.5e-34 148.7 194 42.3
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 7.2e-34 148.3 138 50.7
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 7.5e-31 138.3 127 48.0
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 2.7e-28 129.8 188 36.7
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.9e-26 123.6 125 48.8
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 5.6e-26 122.1 216 34.7
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 6.0e-20 102.1 100 47.0
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 2.3e-19 100.1 98 44.9
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 2.1e-17 93.6 86 46.5
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 4.0e-16 89.4 91 49.5
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 4.0e-16 89.4 161 34.2
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 1.5e-15 87.4 98 45.9
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 2.0e-15 87.0 84 48.8
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 1.3e-06 57.8 56 44.6


User provided reference genes

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