Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.7e-88 329.3 172 100.0
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 5.4e-50 201.4 122 88.5
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 7.9e-41 171.0 155 60.0
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 5.3e-37 158.3 148 57.4
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.5e-36 156.8 125 62.4
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 2.6e-36 156.0 148 56.8
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.3e-35 153.7 140 56.4
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 3.8e-35 152.1 141 58.2
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 3.8e-35 152.1 141 58.2
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 6.5e-35 151.4 141 57.4
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 8.4e-35 151.0 124 59.7
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.4e-34 150.2 144 56.9
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 1.9e-34 149.8 145 56.6
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 1.9e-34 149.8 145 56.6
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.9e-34 149.8 118 61.9
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.5e-34 149.4 119 63.9
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 2.5e-34 149.4 141 57.4
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 2.5e-34 149.4 141 58.2
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.2e-34 148.7 143 56.6
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 4.2e-34 148.7 123 62.6
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 7.1e-34 147.9 156 53.8
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 7.1e-34 147.9 123 61.0
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 7.1e-34 147.9 142 57.7
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 7.1e-34 147.9 157 51.6
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 9.3e-34 147.5 122 62.3
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 9.3e-34 147.5 131 57.3
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.2e-33 147.1 122 61.5
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 3.5e-33 145.6 141 56.0
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 4.6e-33 145.2 141 56.0
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 6.0e-33 144.8 143 54.5
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 6.0e-33 144.8 142 55.6
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.0e-32 144.1 121 59.5
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 1.3e-32 143.7 120 62.5
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 1.3e-32 143.7 147 53.7
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.8e-32 143.3 142 55.6
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.8e-32 143.3 142 57.0
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.8e-32 143.3 139 57.6
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.8e-32 143.3 139 57.6
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 1.8e-32 143.3 128 58.6
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 1.8e-32 143.3 136 55.9
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 1.8e-32 143.3 144 56.9
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 1.8e-32 143.3 142 54.9
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 1.8e-32 143.3 140 56.4
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 2.3e-32 142.9 123 61.0
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 2.3e-32 142.9 119 60.5
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 2.3e-32 142.9 128 57.0
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 2.3e-32 142.9 118 62.7
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 3.0e-32 142.5 142 55.6
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 3.9e-32 142.1 144 53.5
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 3.9e-32 142.1 140 55.0
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.9e-32 142.1 121 59.5
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 3.9e-32 142.1 121 59.5
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 5.1e-32 141.7 142 55.6
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 5.1e-32 141.7 148 51.4
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 5.1e-32 141.7 148 50.7
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 5.1e-32 141.7 125 57.6
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 5.1e-32 141.7 127 57.5
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 5.1e-32 141.7 121 59.5
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 5.1e-32 141.7 145 54.5
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 6.7e-32 141.4 142 55.6
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 6.7e-32 141.4 152 52.0
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 6.7e-32 141.4 125 58.4
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 8.7e-32 141.0 123 59.3
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 8.7e-32 141.0 120 61.7
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 1.1e-31 140.6 122 59.0
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 1.1e-31 140.6 136 55.9
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 1.1e-31 140.6 142 54.2
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 1.1e-31 140.6 121 58.7
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.9e-31 139.8 143 53.1
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.9e-31 139.8 142 53.5
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 3.3e-31 139.0 125 56.8
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 7.4e-31 137.9 146 53.4
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 7.4e-31 137.9 123 57.7
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 7.4e-31 137.9 141 53.9
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 9.7e-31 137.5 130 57.7
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 9.7e-31 137.5 156 51.9
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 1.3e-30 137.1 149 51.0
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 1.3e-30 137.1 123 57.7
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 1.3e-30 137.1 123 59.3
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.6e-30 136.7 125 56.0
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.6e-30 136.7 121 61.2
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 4.8e-30 135.2 172 47.7
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 4.8e-30 135.2 142 52.1
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 6.3e-30 134.8 138 52.9
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 6.3e-30 134.8 123 57.7
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 8.2e-30 134.4 138 52.9
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 8.2e-30 134.4 125 57.6
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 8.2e-30 134.4 123 58.5
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.1e-29 134.0 123 57.7
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.1e-29 134.0 123 56.9
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.4e-29 133.7 123 57.7
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 1.4e-29 133.7 127 52.8
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.4e-29 133.7 123 56.9
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.8e-29 133.3 123 57.7
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 1.8e-29 133.3 119 58.8
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.4e-29 132.9 123 56.9
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 3.1e-29 132.5 123 59.3
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 4.1e-29 132.1 126 56.3
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 5.3e-29 131.7 123 56.1
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 5.3e-29 131.7 126 55.6
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 5.3e-29 131.7 130 53.8
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 9.0e-29 131.0 142 53.5
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 1.2e-28 130.6 147 52.4
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 1.2e-28 130.6 147 52.4
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 1.2e-28 130.6 147 52.4
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 1.2e-28 130.6 147 52.4
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 4.5e-28 128.6 126 56.3
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 4.5e-28 128.6 123 56.9
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 4.5e-28 128.6 147 51.7
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 4.5e-28 128.6 126 56.3
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 7.6e-28 127.9 123 56.9
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 7.6e-28 127.9 126 56.3
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.7e-27 126.7 132 56.1
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 3.2e-26 122.5 162 43.2
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 4.2e-26 122.1 104 62.5
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 3.6e-25 119.0 106 55.7
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 6.1e-25 118.2 146 42.5
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 3.9e-24 115.5 112 52.7
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 3.9e-24 115.5 98 58.2
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 5.1e-24 115.2 97 57.7
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 1.3e-22 110.5 100 58.0
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.7e-22 110.2 131 48.9
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 6.3e-22 108.2 98 57.1
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 9.1e-21 104.4 96 58.3
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.7e-19 100.1 75 70.7
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 3.0e-16 89.4 72 58.3
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 2.0e-15 86.7 75 61.3
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 1.3e-14 84.0 89 53.9
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 6.3e-14 81.6 67 62.7
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 4.7e-09 65.5 52 57.7
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 3.9e-08 62.4 48 68.8
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 3.9e-08 62.4 54 53.7
Solyc06g049060.3 Solanum lycopersicum HOM05D000289 ORTHO05D000208 5.7e-07 58.5 140 33.6
Sopen06g015420 Solanum pennellii HOM05D000289 ORTHO05D000208 7.4e-07 58.2 140 32.9
PGSC0003DMG400016636 Solanum tuberosum HOM05D000289 ORTHO05D000208 7.4e-07 58.2 140 32.9
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 7.4e-07 58.2 56 51.8
CAN.G183.24 Capsicum annuum HOM05D000289 ORTHO05D000208 9.7e-07 57.8 140 31.4
Medtr4g014700 Medicago truncatula HOM05D000289 ORTHO05D000208 9.7e-07 57.8 141 30.5
Nitab4.5_0004599g0040 Nicotiana tabacum HOM05D000289 ORTHO05D000208 9.7e-07 57.8 140 32.1
SEGI_10815 Sequoiadendron giganteum HOM05D000289 ORTHO05D000208 9.7e-07 57.8 149 34.2
Peaxi162Scf00739g00320 Petunia axillaris HOM05D000289 ORTHO05D000208 1.3e-06 57.4 140 31.4
VMungo0331G2035 Vigna mungo HOM05D000289 ORTHO05D000208 1.3e-06 57.4 141 31.9
CsaV3_3G034220 Cucumis sativus L. HOM05D000289 ORTHO05D000208 1.7e-06 57.0 144 31.2
Glyma.03G076200 Glycine max HOM05D000289 ORTHO05D000208 1.7e-06 57.0 141 31.2
Psat7g246960 Pisum sativum HOM05D000289 ORTHO05D000208 1.7e-06 57.0 141 30.5
Nitab4.5_0012890g0010 Nicotiana tabacum HOM05D000289 ORTHO05D000208 2.2e-06 56.6 142 31.7
Actinidia29138 Actinidia chinensis HOM05D000289 ORTHO05D000208 2.8e-06 56.2 141 33.3
ClCG10G021750 Citrullus lanatus HOM05D000289 ORTHO05D000208 3.7e-06 55.8 150 30.7
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 4.8e-06 55.5 72 44.4
Glyma.01G110500 Glycine max HOM05D000289 ORTHO05D000208 4.8e-06 55.5 141 32.6
Phvul.010G007900 Phaseolus vulgaris HOM05D000289 ORTHO05D000208 6.3e-06 55.1 141 29.8
PGR031G2795 Punica granatum HOM05D000289 ORTHO05D000208 6.3e-06 55.1 162 30.9
QL07p036162 Quercus lobata HOM05D000289 ORTHO05D000208 6.3e-06 55.1 144 32.6
Aqoxy4G02387 Aquilegia oxysepala HOM05D000289 ORTHO05D000208 8.2e-06 54.7 144 31.2
arahy.Tifrunner.gnm1.ann1.S242D2 Arachis hypogaea HOM05D000289 ORTHO05D000208 8.2e-06 54.7 144 29.2
Migut.J00233 Erythranthe guttata HOM05D000289 ORTHO05D000208 8.2e-06 54.7 141 29.8
Lalb_Chr07g0193361 Lupinus albus HOM05D000289 ORTHO05D000208 8.2e-06 54.7 141 29.8
Sed0025870 Sechium edule HOM05D000289 ORTHO05D000208 8.2e-06 54.7 144 30.6
SEGI_24027 Sequoiadendron giganteum HOM05D000289 ORTHO05D000208 8.2e-06 54.7 140 34.3


User provided reference genes

Program Settings