Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 0.0e+00 1188.7 579 100.0
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 5.9e-40 169.9 188 47.3
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 2.8e-26 124.4 137 44.5
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 7.0e-25 119.8 168 39.3
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 6.6e-23 113.2 138 39.9
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 4.3e-22 110.5 258 29.1
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 3.0e-20 104.4 101 45.5
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 1.7e-18 98.6 96 47.9
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.4e-17 95.5 116 42.2
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 9.2e-17 92.8 224 29.0
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 2.0e-16 91.7 109 37.6
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 3.5e-16 90.9 96 44.8
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 4.6e-16 90.5 205 29.3
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 7.8e-16 89.7 107 42.1
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 7.8e-16 89.7 138 37.0
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.0e-15 89.4 109 43.1
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.0e-15 89.4 101 41.6
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 3.0e-15 87.8 107 39.3
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 1.5e-14 85.5 134 38.1
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.3e-14 84.3 170 33.5
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 4.3e-14 84.0 123 39.8
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 9.5e-14 82.8 105 40.0
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.6e-13 82.0 105 38.1
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 2.1e-13 81.6 123 36.6
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 2.1e-13 81.6 99 42.4
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.8e-13 81.3 98 41.8
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 2.8e-13 81.3 103 40.8
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 2.8e-13 81.3 90 42.2
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 3.6e-13 80.9 91 45.1
PSO528G0025 Papaver somniferum HOM05D020877 ORTHO05D003486 6.2e-13 80.1 108 37.0
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 6.2e-13 80.1 107 39.3
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.1e-12 79.3 103 39.8
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 1.8e-12 78.6 138 37.0
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.3e-12 78.2 117 41.0
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.3e-12 78.2 106 37.7
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 3.1e-12 77.8 115 38.3
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 4.0e-12 77.4 107 38.3
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 4.0e-12 77.4 104 39.4
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 5.2e-12 77.0 123 38.2
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 5.2e-12 77.0 132 35.6
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 6.8e-12 76.6 117 40.2
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 6.8e-12 76.6 88 46.6
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 6.8e-12 76.6 107 37.4
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 6.8e-12 76.6 98 39.8
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 8.9e-12 76.3 149 32.2
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.2e-11 75.9 348 25.9
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 1.2e-11 75.9 97 40.2
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 1.5e-11 75.5 326 28.2
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 3.4e-11 74.3 326 28.2
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 3.4e-11 74.3 389 27.2
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 3.4e-11 74.3 182 32.4
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 3.4e-11 74.3 108 35.2
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 4.4e-11 73.9 168 33.9
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 5.8e-11 73.6 115 33.9
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 7.5e-11 73.2 170 29.4
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 9.8e-11 72.8 99 37.4
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 9.8e-11 72.8 96 37.5
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.7e-10 72.0 107 38.3
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 2.9e-10 71.2 99 34.3
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 3.7e-10 70.9 113 32.7
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 4.9e-10 70.5 111 34.2
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.1e-09 69.3 97 36.1
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 1.1e-09 69.3 108 31.5
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 1.9e-09 68.6 129 32.6
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 1.9e-09 68.6 174 28.7
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 3.2e-09 67.8 98 37.8
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.2e-09 67.8 112 31.2
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 4.1e-09 67.4 106 34.9
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 4.1e-09 67.4 132 30.3
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 5.4e-09 67.0 108 31.5
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 7.0e-09 66.6 114 32.5
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 7.0e-09 66.6 109 33.9
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 7.0e-09 66.6 102 34.3
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 7.0e-09 66.6 99 33.3
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 9.2e-09 66.2 112 32.1
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 9.2e-09 66.2 132 34.1
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 1.2e-08 65.9 124 32.3
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.6e-08 65.5 121 33.9
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 1.6e-08 65.5 110 33.6
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.6e-08 65.5 111 36.9
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.0e-08 65.1 134 30.6
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 2.0e-08 65.1 101 32.7
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 2.0e-08 65.1 98 35.7
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 2.7e-08 64.7 112 36.6
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.7e-08 64.7 86 39.5
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 2.7e-08 64.7 87 39.1
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 2.7e-08 64.7 106 36.8
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.7e-08 64.7 97 38.1
Aqoxy6G00303 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 4.6e-08 63.9 168 27.4
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 4.6e-08 63.9 100 35.0
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 4.6e-08 63.9 116 31.9
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 6.0e-08 63.5 98 37.8
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 6.0e-08 63.5 87 37.9
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 6.0e-08 63.5 108 34.3
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 6.0e-08 63.5 101 33.7
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 6.0e-08 63.5 97 37.1
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 6.0e-08 63.5 99 36.4
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.0e-07 62.8 113 34.5
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.3e-07 62.4 98 34.7
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.3e-07 62.4 94 37.2
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.3e-07 62.4 110 32.7
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.3e-07 62.4 99 38.4
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 2.3e-07 61.6 300 25.3
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 3.0e-07 61.2 241 26.1
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 3.0e-07 61.2 100 30.0
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 3.9e-07 60.8 99 35.4
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 3.9e-07 60.8 99 35.4
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 3.9e-07 60.8 104 34.6
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 3.9e-07 60.8 104 34.6
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 3.9e-07 60.8 117 29.1
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 5.0e-07 60.5 102 30.4
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 5.0e-07 60.5 91 37.4
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 5.0e-07 60.5 102 35.3
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 6.6e-07 60.1 81 42.0
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 6.6e-07 60.1 115 29.6
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 8.6e-07 59.7 94 34.0
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 8.6e-07 59.7 94 34.0
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 8.6e-07 59.7 102 31.4
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 8.6e-07 59.7 97 33.0
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 8.6e-07 59.7 98 32.7
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 1.1e-06 59.3 86 37.2
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.1e-06 59.3 225 26.2
SEGI_02275 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.1e-06 59.3 63 42.9
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.5e-06 58.9 104 33.7
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.5e-06 58.9 134 28.4
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 1.9e-06 58.5 108 32.4
Mapoly0009s0110 Marchantia polymorpha HOM05D002459 ORTHO05D025830 1.9e-06 58.5 46 47.8
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 1.9e-06 58.5 118 30.5
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 2.5e-06 58.2 94 33.0
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.5e-06 58.2 94 33.0
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.5e-06 58.2 104 31.7
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 3.3e-06 57.8 59 47.5
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 3.3e-06 57.8 151 29.1
SEGI_11207 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 3.3e-06 57.8 63 41.3
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 3.3e-06 57.8 101 28.7
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 3.3e-06 57.8 101 28.7
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 4.3e-06 57.4 106 30.2
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 5.6e-06 57.0 89 40.4
Mapoly0009s0033 Marchantia polymorpha HOM05D016555 ORTHO05D016512 7.3e-06 56.6 76 35.5


User provided reference genes

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