Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 7.0e-150 533.9 260 100.0
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 5.3e-49 198.7 210 44.3
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 7.0e-49 198.4 202 48.5
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 2.9e-47 193.0 201 45.3
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 5.0e-47 192.2 214 43.5
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 5.0e-47 192.2 210 44.3
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 5.0e-47 192.2 234 44.0
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 6.5e-47 191.8 214 44.9
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 8.5e-47 191.4 203 45.8
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 1.1e-46 191.0 214 43.9
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.5e-46 190.7 224 44.2
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.9e-46 190.3 198 44.9
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.9e-46 190.3 190 45.3
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 2.5e-46 189.9 215 43.3
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 3.2e-46 189.5 193 48.2
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 5.5e-46 188.7 209 44.0
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 7.2e-46 188.3 209 45.9
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 7.2e-46 188.3 193 48.7
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.2e-45 187.6 218 44.5
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.2e-45 187.6 204 48.0
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.2e-45 187.6 234 44.0
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 2.7e-45 186.4 204 48.0
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 4.7e-45 185.7 196 49.0
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 6.1e-45 185.3 204 44.6
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 8.0e-45 184.9 214 44.9
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.0e-44 184.5 209 43.1
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.4e-44 184.1 198 46.5
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.4e-44 184.1 207 44.4
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.4e-44 184.1 209 45.0
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.8e-44 183.7 203 46.3
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 4.0e-44 182.6 221 42.1
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 5.2e-44 182.2 197 44.7
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 5.2e-44 182.2 185 47.6
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 5.2e-44 182.2 192 45.3
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 5.2e-44 182.2 201 44.8
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 5.2e-44 182.2 171 49.7
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 5.2e-44 182.2 211 43.1
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 6.7e-44 181.8 191 46.6
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 1.2e-43 181.0 241 38.2
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.2e-43 181.0 196 44.9
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 1.2e-43 181.0 232 42.2
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.5e-43 180.6 200 45.5
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.5e-43 180.6 204 44.6
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 2.0e-43 180.3 191 44.0
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 5.7e-43 178.7 197 44.2
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 5.7e-43 178.7 223 40.4
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 7.5e-43 178.3 212 42.5
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 7.5e-43 178.3 216 41.7
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 9.7e-43 177.9 199 42.2
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-42 177.6 215 41.4
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-42 177.6 212 42.0
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.3e-42 177.6 210 42.9
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.7e-42 177.2 214 44.9
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.7e-42 177.2 128 60.9
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 3.7e-42 176.0 210 41.4
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 3.7e-42 176.0 217 43.8
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 6.3e-42 175.3 191 45.0
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 6.3e-42 175.3 175 46.9
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 1.1e-41 174.5 206 42.2
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.4e-41 173.3 209 40.2
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.4e-41 173.3 217 41.5
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 4.1e-41 172.6 216 40.3
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 4.1e-41 172.6 217 41.5
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 5.3e-41 172.2 196 43.4
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 7.0e-41 171.8 225 40.0
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 9.1e-41 171.4 196 43.4
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.6e-40 170.6 211 43.1
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 2.0e-40 170.2 194 43.8
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 2.0e-40 170.2 193 44.6
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 2.7e-40 169.9 188 43.6
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 2.7e-40 169.9 200 42.0
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 3.5e-40 169.5 203 40.4
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 3.5e-40 169.5 210 39.5
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 7.7e-40 168.3 192 44.3
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 7.7e-40 168.3 207 41.1
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.0e-39 167.9 189 44.4
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.0e-39 167.9 211 39.3
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.0e-39 167.9 194 44.3
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 1.3e-39 167.5 201 42.3
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.9e-39 166.4 185 46.5
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 2.9e-39 166.4 195 41.5
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 2.9e-39 166.4 220 39.5
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 2.9e-39 166.4 206 39.3
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 3.8e-39 166.0 202 41.1
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 5.0e-39 165.6 174 46.6
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 5.0e-39 165.6 129 55.8
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 6.5e-39 165.2 211 38.9
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 6.5e-39 165.2 211 38.9
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 1.1e-38 164.5 194 41.8
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.9e-38 163.7 207 40.1
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.9e-38 163.7 189 42.3
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 2.5e-38 163.3 200 41.0
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 2.5e-38 163.3 200 41.0
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 2.5e-38 163.3 207 40.1
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.5e-38 163.3 207 40.1
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 3.2e-38 162.9 203 42.9
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 1.2e-37 161.0 121 56.2
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 1.2e-37 161.0 203 40.9
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.1e-37 160.2 219 40.2
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 6.1e-37 158.7 195 45.1
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 6.1e-37 158.7 214 42.5
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.3e-36 156.8 185 42.7
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 5.2e-36 155.6 201 40.3
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 8.8e-36 154.8 206 42.2
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.2e-35 154.5 203 38.4
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.4e-35 152.9 146 47.3
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 9.8e-35 151.4 174 44.3
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 9.8e-35 151.4 208 37.0
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.3e-34 151.0 234 35.5
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 2.8e-34 149.8 179 44.1
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 6.3e-34 148.7 150 48.0
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 8.3e-34 148.3 172 43.6
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.4e-33 147.5 196 39.8
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 1.2e-32 144.4 174 42.5
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.2e-32 144.4 208 36.5
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.6e-32 144.1 132 51.5
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.5e-32 142.5 230 37.4
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 5.9e-32 142.1 156 45.5
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-31 141.0 228 34.2
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.7e-31 140.6 191 40.3
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.0e-31 139.0 196 38.8
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 8.6e-31 138.3 193 41.5
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 3.3e-30 136.3 88 61.4
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 5.5e-30 135.6 106 54.7
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.2e-29 134.4 198 35.9
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 1.5e-27 127.5 106 54.7
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.7e-26 122.9 134 43.3
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.1e-25 121.3 251 33.9
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.0e-23 112.5 223 34.5
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.3e-22 109.8 228 34.2
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 7.3e-22 108.6 66 68.2
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 8.9e-20 101.7 191 33.0
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 3.3e-14 83.2 107 43.0
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 7.3e-14 82.0 86 45.3
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 2.8e-13 80.1 53 56.6
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 3.1e-12 76.6 58 56.9
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 5.2e-12 75.9 68 45.6
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.5e-11 74.3 64 46.9
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 4.4e-11 72.8 131 35.9
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.3e-10 71.2 52 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4109 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.9e-09 67.4 118 38.1
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 3.5e-08 63.2 213 28.6
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 5.6e-06 55.8 110 37.3


User provided reference genes

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