Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 4.9e-52 207.6 112 100.0
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 5.9e-21 104.4 109 51.4
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 1.7e-20 102.8 109 50.5
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 2.2e-20 102.4 109 48.6
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 2.2e-20 102.4 109 48.6
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.2e-20 102.4 109 48.6
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.2e-20 102.4 109 48.6
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 2.2e-20 102.4 109 47.7
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 2.2e-20 102.4 109 47.7
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 5.0e-20 101.3 109 49.5
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 5.0e-20 101.3 109 49.5
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 5.0e-20 101.3 109 48.6
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 6.5e-20 100.9 109 47.7
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 6.5e-20 100.9 109 47.7
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 8.5e-20 100.5 109 48.6
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.1e-19 100.1 109 49.5
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 1.1e-19 100.1 109 49.5
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.5e-19 99.8 109 49.5
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.9e-19 99.4 109 47.7
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 1.9e-19 99.4 105 50.5
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 2.5e-19 99.0 109 47.7
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 2.5e-19 99.0 109 47.7
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 2.5e-19 99.0 109 48.6
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 2.5e-19 99.0 109 47.7
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 3.2e-19 98.6 109 47.7
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.2e-19 98.6 53 92.5
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 4.2e-19 98.2 109 46.8
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 4.2e-19 98.2 109 45.0
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 4.2e-19 98.2 109 47.7
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 5.5e-19 97.8 110 49.1
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 7.2e-19 97.4 109 47.7
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 9.4e-19 97.1 109 45.9
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.2e-18 96.7 109 45.9
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 1.2e-18 96.7 111 46.8
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 1.2e-18 96.7 109 46.8
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 1.2e-18 96.7 109 46.8
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 1.2e-18 96.7 109 46.8
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.6e-18 96.3 108 48.1
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.6e-18 96.3 106 49.1
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.6e-18 96.3 106 47.2
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.6e-18 96.3 109 45.9
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.6e-18 96.3 109 47.7
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.6e-18 96.3 109 47.7
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.6e-18 96.3 109 47.7
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 1.6e-18 96.3 109 46.8
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 1.6e-18 96.3 109 47.7
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 2.1e-18 95.9 84 56.0
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 2.7e-18 95.5 109 47.7
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 2.7e-18 95.5 109 47.7
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.7e-18 95.5 109 45.9
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 2.7e-18 95.5 109 45.0
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 2.7e-18 95.5 109 45.9
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 2.7e-18 95.5 109 45.9
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 3.6e-18 95.1 109 45.9
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 3.6e-18 95.1 109 45.9
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.6e-18 95.1 108 48.1
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.6e-18 95.1 109 46.8
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 3.6e-18 95.1 109 45.9
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 4.7e-18 94.7 105 48.6
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 4.7e-18 94.7 106 48.1
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 4.7e-18 94.7 109 47.7
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 4.7e-18 94.7 109 47.7
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 4.7e-18 94.7 109 45.9
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 4.7e-18 94.7 109 45.9
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 4.7e-18 94.7 111 45.0
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 4.7e-18 94.7 108 47.2
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 4.7e-18 94.7 109 45.9
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 4.7e-18 94.7 109 45.9
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 6.1e-18 94.4 109 45.9
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 8.0e-18 94.0 106 48.1
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 8.0e-18 94.0 109 46.8
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.0e-17 93.6 109 45.9
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.0e-17 93.6 109 45.9
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 1.4e-17 93.2 109 45.9
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.4e-17 93.2 109 45.9
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.4e-17 93.2 106 45.3
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.4e-17 93.2 109 45.9
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 1.8e-17 92.8 109 45.0
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.8e-17 92.8 81 53.1
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 1.8e-17 92.8 106 48.1
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.8e-17 92.8 111 46.8
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.8e-17 92.8 109 45.0
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.8e-17 92.8 109 45.0
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 2.3e-17 92.4 102 49.0
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.3e-17 92.4 109 45.0
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 3.0e-17 92.0 109 45.9
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 3.0e-17 92.0 108 47.2
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 3.0e-17 92.0 78 56.4
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 4.0e-17 91.7 81 56.8
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 4.0e-17 91.7 109 45.0
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 4.0e-17 91.7 111 46.8
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 4.0e-17 91.7 107 45.8
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 4.0e-17 91.7 109 46.8
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 5.2e-17 91.3 109 44.0
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 5.2e-17 91.3 109 44.0
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 5.2e-17 91.3 109 44.0
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 6.7e-17 90.9 106 48.1
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 6.7e-17 90.9 106 46.2
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 8.8e-17 90.5 106 46.2
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 1.2e-16 90.1 109 43.1
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.2e-16 90.1 109 45.9
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 1.5e-16 89.7 107 43.0
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.5e-16 89.7 81 53.1
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.5e-16 89.7 106 45.3
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 3.3e-16 88.6 106 45.3
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 4.4e-16 88.2 109 44.0
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 4.4e-16 88.2 109 44.0
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.4e-16 88.2 109 43.1
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 4.4e-16 88.2 86 51.2
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 4.4e-16 88.2 111 45.9
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 7.5e-16 87.4 109 44.0
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 9.7e-16 87.0 78 53.8
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 9.7e-16 87.0 78 55.1
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 1.3e-15 86.7 109 43.1
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 1.7e-15 86.3 109 43.1
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 1.7e-15 86.3 109 45.0
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.7e-15 86.3 140 37.9
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.7e-15 86.3 107 44.9
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 2.2e-15 85.9 109 44.0
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 2.2e-15 85.9 109 44.0
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 2.2e-15 85.9 109 44.0
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 2.8e-15 85.5 109 44.0
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 2.8e-15 85.5 77 54.5
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 4.8e-15 84.7 109 43.1
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 6.3e-15 84.3 105 43.8
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 8.2e-15 84.0 107 46.7
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 3.1e-14 82.0 81 53.1
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 3.1e-14 82.0 81 53.1
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 7.7e-13 77.4 65 55.4
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.5e-12 73.9 90 44.4
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.9e-11 72.8 103 42.7
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.5e-11 72.4 81 44.4
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 3.2e-11 72.0 106 39.6
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 3.6e-10 68.6 104 41.3
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.8e-09 66.2 95 41.1
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 4.0e-09 65.1 51 56.9
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.2e-08 63.5 106 33.0
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.3e-07 60.1 59 49.2
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 2.8e-07 58.9 78 42.3
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 3.7e-07 58.5 50 54.0
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 4.8e-07 58.2 86 39.5
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 4.8e-07 58.2 102 39.2
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 8.3e-07 57.4 45 57.8
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 1.1e-06 57.0 51 52.9
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 9.1e-06 53.9 48 47.9


User provided reference genes

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