Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 3.8e-169 598.2 328 100.0
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.9e-51 207.2 319 40.4
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 2.5e-51 206.8 316 40.8
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 9.4e-51 204.9 327 39.4
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.2e-50 204.5 327 40.4
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 2.1e-50 203.8 316 39.6
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 3.6e-50 203.0 327 39.1
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.8e-49 200.7 327 37.9
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 5.2e-49 199.1 327 38.8
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.1e-48 198.0 193 52.8
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.1e-48 198.0 193 52.8
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 5.7e-48 195.7 327 38.2
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 7.4e-48 195.3 327 37.6
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 7.4e-48 195.3 324 38.6
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.7e-47 194.1 317 40.7
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.2e-47 193.7 330 37.6
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 2.2e-47 193.7 232 45.7
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 4.8e-47 192.6 324 38.9
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 6.3e-47 192.2 326 37.7
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 6.3e-47 192.2 323 38.4
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.4e-46 190.3 325 39.7
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 3.1e-46 189.9 334 38.3
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 5.3e-46 189.1 319 38.9
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 4.5e-45 186.0 233 44.2
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 7.7e-45 185.3 316 38.0
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 5.0e-44 182.6 321 36.1
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 8.5e-44 181.8 324 39.2
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 2.5e-43 180.3 354 36.7
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 4.2e-43 179.5 316 38.0
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 1.2e-42 177.9 193 48.2
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.7e-42 176.8 329 38.0
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.0e-41 174.9 112 70.5
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.4e-41 174.5 330 38.2
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.5e-40 171.0 316 36.4
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 2.0e-40 170.6 315 36.2
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 2.6e-40 170.2 346 37.0
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 3.3e-40 169.9 323 36.5
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 3.7e-39 166.4 327 36.4
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 1.4e-38 164.5 326 35.6
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.1e-38 163.3 333 36.6
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 9.1e-38 161.8 316 34.5
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 9.1e-38 161.8 330 36.4
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 2.0e-37 160.6 117 60.7
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.0e-37 160.6 325 36.9
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 2.0e-37 160.6 324 36.4
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 5.9e-37 159.1 321 35.2
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 5.9e-37 159.1 316 32.9
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.0e-36 158.3 330 35.8
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.0e-36 158.3 113 62.8
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.0e-36 158.3 117 61.5
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.3e-36 157.9 331 35.6
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 1.7e-36 157.5 117 60.7
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 2.2e-36 157.1 326 33.4
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 2.9e-36 156.8 113 61.9
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 5.0e-36 156.0 113 61.1
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 5.0e-36 156.0 316 33.9
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 6.5e-36 155.6 113 61.1
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 8.5e-36 155.2 319 36.4
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 8.5e-36 155.2 327 34.9
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 8.5e-36 155.2 323 34.7
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 3.2e-35 153.3 316 36.4
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 3.2e-35 153.3 316 36.4
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 3.2e-35 153.3 326 34.0
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 3.2e-35 153.3 323 34.4
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 5.5e-35 152.5 222 40.5
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 5.5e-35 152.5 327 34.9
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 5.5e-35 152.5 321 34.3
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 5.5e-35 152.5 323 34.4
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.2e-35 152.1 323 35.0
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 7.2e-35 152.1 117 61.5
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 9.4e-35 151.8 325 35.7
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.2e-34 151.4 324 35.5
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.2e-34 151.4 282 38.3
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.2e-34 151.4 327 34.6
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.6e-34 151.0 113 59.3
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 2.7e-34 150.2 246 37.8
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 2.7e-34 150.2 200 42.0
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 2.7e-34 150.2 329 34.0
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 3.6e-34 149.8 113 57.5
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 6.1e-34 149.1 323 34.7
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 8.0e-34 148.7 316 33.9
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 1.0e-33 148.3 254 37.0
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.0e-33 148.3 327 34.3
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.4e-33 147.9 326 35.6
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.3e-33 147.1 337 35.0
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 2.3e-33 147.1 113 59.3
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 5.2e-33 146.0 321 35.8
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 5.2e-33 146.0 318 32.7
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 6.8e-33 145.6 325 32.9
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 8.8e-33 145.2 360 31.1
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 8.8e-33 145.2 360 31.1
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 8.8e-33 145.2 329 34.3
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.2e-32 144.8 319 35.4
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 2.0e-32 144.1 113 58.4
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.0e-32 144.1 319 35.1
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 5.7e-32 142.5 335 32.8
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 7.5e-32 142.1 116 55.2
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 4.8e-31 139.4 342 33.6
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 1.1e-30 138.3 319 32.9
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.8e-30 137.5 256 40.2
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 2.4e-30 137.1 144 46.5
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.5e-27 127.9 303 34.7
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.5e-27 127.9 268 35.8
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 3.6e-26 123.2 294 33.7
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 4.7e-26 122.9 359 29.2
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 4.7e-26 122.9 359 29.2
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.0e-26 122.1 102 56.9
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.8e-25 120.9 113 51.3
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 6.8e-25 119.0 322 30.4
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 4.9e-23 112.8 293 32.4
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 8.3e-23 112.1 301 32.9
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 2.0e-21 107.5 301 31.9
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 2.0e-21 107.5 73 58.9
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 2.7e-21 107.1 275 33.5
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 3.5e-21 106.7 295 31.2
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 3.3e-19 100.1 134 42.5
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 4.3e-19 99.8 73 61.6
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 5.6e-19 99.4 343 29.7
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 9.5e-19 98.6 198 31.3
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.6e-18 97.8 249 34.1
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 8.0e-18 95.5 252 34.1
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 7.5e-16 89.0 257 31.5
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 9.8e-16 88.6 248 32.7
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 9.8e-16 88.6 248 32.7
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 2.2e-15 87.4 75 50.7
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 8.3e-15 85.5 332 29.2
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 1.3e-12 78.2 51 60.8
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.9e-12 76.6 143 34.3
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 4.3e-11 73.2 292 27.7
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 4.3e-11 73.2 276 28.3
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.2e-10 71.6 253 29.6
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.8e-10 70.5 277 28.2
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.0e-09 68.6 277 27.8
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 1.5e-08 64.7 179 27.4
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 1.5e-08 64.7 103 43.7
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.3e-07 61.6 262 26.7


User provided reference genes

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