Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 0.0e+00 1987.2 1009 100.0
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 0.0e+00 1206.8 1014 65.2
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 0.0e+00 1106.7 1024 59.8
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.0e-177 626.3 1125 39.6
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.7e-167 594.3 932 43.1
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.4e-166 589.3 904 43.6
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.5e-155 554.7 936 40.2
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.8e-154 549.7 912 39.4
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 8.8e-140 502.3 489 54.2
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 6.1e-133 479.6 822 38.0
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 9.5e-102 375.9 513 43.1
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 8.0e-93 346.3 484 42.8
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 4.0e-92 344.0 482 41.1
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 3.4e-91 340.9 478 42.5
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 5.8e-91 340.1 478 41.8
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 7.5e-91 339.7 567 38.6
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 7.5e-91 339.7 481 42.4
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 9.8e-91 339.3 482 42.5
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.3e-90 339.0 482 42.3
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 2.2e-90 338.2 481 41.0
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 3.7e-90 337.4 480 43.3
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 6.4e-90 336.7 477 43.6
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 8.3e-90 336.3 482 41.3
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.9e-89 335.1 570 38.8
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.9e-89 335.1 477 42.1
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 2.4e-89 334.7 482 41.5
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.4e-89 334.7 483 42.0
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 2.4e-89 334.7 498 42.2
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 3.2e-89 334.3 482 41.7
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 3.2e-89 334.3 483 41.6
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 4.1e-89 334.0 481 42.0
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 4.1e-89 334.0 482 40.9
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 7.0e-89 333.2 533 40.7
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 7.0e-89 333.2 482 40.5
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 1.2e-88 332.4 480 43.1
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.6e-88 332.0 477 43.0
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 2.0e-88 331.6 481 40.5
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 3.5e-88 330.9 482 41.7
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 6.0e-88 330.1 479 42.6
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.3e-87 328.9 479 42.2
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.7e-87 328.6 482 41.5
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.7e-87 328.6 479 41.1
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 1.7e-87 328.6 481 41.6
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 1.7e-87 328.6 645 37.4
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 2.3e-87 328.2 481 41.4
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 3.9e-87 327.4 546 37.2
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.9e-87 327.4 477 41.5
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 5.0e-87 327.0 537 38.7
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 5.0e-87 327.0 481 41.0
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 6.6e-87 326.6 477 41.5
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 6.6e-87 326.6 628 35.8
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.5e-86 325.5 628 35.7
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.9e-86 325.1 678 33.9
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.9e-86 325.1 489 40.5
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.5e-86 324.7 481 41.4
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 3.3e-86 324.3 478 40.4
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.3e-86 323.9 481 41.6
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 5.6e-86 323.6 495 39.8
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.3e-86 323.2 481 41.2
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 9.5e-86 322.8 481 41.2
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.2e-85 322.4 481 40.7
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 1.2e-85 322.4 482 39.8
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 2.8e-85 321.2 548 38.3
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 2.8e-85 321.2 499 39.9
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 3.6e-85 320.9 479 40.9
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 4.7e-85 320.5 482 41.1
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 8.0e-85 319.7 479 41.3
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.1e-84 319.3 481 39.9
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.4e-84 318.9 479 39.9
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.4e-84 318.9 487 40.5
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.4e-84 318.9 703 34.1
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 3.1e-84 317.8 481 39.9
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 3.1e-84 317.8 542 38.0
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 4.0e-84 317.4 483 39.5
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 5.2e-84 317.0 480 41.2
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 6.8e-84 316.6 673 34.9
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 8.9e-84 316.2 480 41.0
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 8.9e-84 316.2 482 39.4
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 8.9e-84 316.2 479 39.2
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 8.9e-84 316.2 482 40.7
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-83 315.8 480 40.8
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 1.2e-83 315.8 542 37.6
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 2.0e-83 315.1 545 38.0
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 2.6e-83 314.7 480 40.6
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 2.6e-83 314.7 505 39.4
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 5.8e-83 313.5 551 37.2
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 5.8e-83 313.5 482 39.8
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 9.8e-83 312.8 546 37.5
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 9.8e-83 312.8 480 40.4
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.3e-82 312.4 546 37.5
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.7e-82 312.0 542 38.6
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 2.2e-82 311.6 480 40.0
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 2.9e-82 311.2 477 39.2
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 3.7e-82 310.8 536 37.7
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 3.7e-82 310.8 479 39.5
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 6.4e-82 310.1 773 34.0
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 8.3e-82 309.7 479 39.0
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 8.3e-82 309.7 480 40.4
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 8.3e-82 309.7 743 33.2
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.4e-81 308.9 477 41.9
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 1.9e-81 308.5 450 40.4
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 3.2e-81 307.8 538 38.1
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 4.1e-81 307.4 481 39.7
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 4.1e-81 307.4 542 38.0
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 2.1e-80 305.1 676 34.6
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 2.7e-80 304.7 482 40.7
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 3.5e-80 304.3 464 39.9
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 4.6e-80 303.9 428 41.4
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 1.3e-79 302.4 478 39.1
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 3.9e-79 300.8 544 35.8
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 8.6e-79 299.7 762 32.9
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 1.5e-78 298.9 477 38.8
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 2.5e-78 298.1 663 33.6
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 5.6e-78 297.0 477 40.7
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 1.2e-77 295.8 482 39.6
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.8e-76 292.0 481 38.5
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 3.4e-75 287.7 481 38.3
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 3.4e-75 287.7 485 37.3
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 5.8e-75 287.0 481 38.7
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 5.8e-75 287.0 479 38.2
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 9.9e-75 286.2 483 38.5
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 4.9e-74 283.9 661 33.3
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.7e-71 275.4 388 43.8
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 2.2e-66 258.5 472 37.1
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 6.4e-66 256.9 663 32.0
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 2.4e-65 255.0 526 35.0
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.6e-64 252.3 644 32.1
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 8.1e-61 240.0 192 57.8
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 2.4e-60 238.4 385 38.4
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 9.3e-57 226.5 187 54.5
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 3.6e-53 214.5 477 32.9
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.1e-52 213.0 472 34.1
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.5e-38 165.2 547 27.8
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.2e-35 156.4 244 38.1
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.8e-28 132.5 483 28.4
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.9e-20 104.0 252 35.3
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 5.5e-17 94.4 97 48.5
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 3.0e-15 88.6 344 28.8
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 1.6e-08 66.2 121 35.5
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 2.1e-08 65.9 92 37.0
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 5.2e-07 61.2 45 55.6


User provided reference genes

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