Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_1510 Physcomitrium patens HOM05D003361 ORTHO05D003760 1.6e-125 454.1 585 100.0
Pp3c4_3150 Physcomitrium patens HOM05D003361 ORTHO05D003760 2.1e-69 267.7 247 73.7
Mapoly0032s0095 Marchantia polymorpha HOM05D003361 ORTHO05D003760 1.2e-51 208.8 247 53.0
AagrBONN_evm.TU.Sc2ySwM_362.1382 Anthoceros agrestis HOM05D003361 ORTHO05D003760 4.6e-40 170.2 250 57.2
SEGI_28212 Sequoiadendron giganteum HOM05D003361 ORTHO05D003760 2.3e-39 167.9 244 54.5
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 2.5e-38 164.5 249 38.2
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 4.3e-38 163.7 249 53.8
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 3.6e-37 160.6 231 56.7
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 1.8e-36 158.3 245 56.3
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 2.3e-36 157.9 261 37.5
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 4.0e-36 157.1 244 54.1
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 1.2e-35 155.6 230 52.6
Actinidia15974 Actinidia chinensis HOM05D003361 ORTHO05D003760 3.4e-35 154.1 241 54.4
Sc08g0006030 Simmondsia chinensis HOM05D003361 ORTHO05D003760 3.4e-35 154.1 228 56.1
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 5.8e-35 153.3 230 52.6
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 1.3e-34 152.1 236 53.4
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 2.2e-34 151.4 231 54.5
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 2.2e-34 151.4 233 55.4
Haze_16605 Corylus avellana HOM05D003361 ORTHO05D003760 2.9e-34 151.0 246 37.0
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 2.9e-34 151.0 226 54.0
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 2.9e-34 151.0 231 54.1
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 4.9e-34 150.2 226 54.4
SalBow7G3482 Salvia bowleyana HOM05D003361 ORTHO05D003760 4.9e-34 150.2 226 54.4
SMO200G0229 Selaginella moellendorffii HOM05D003361 ORTHO05D003760 1.4e-33 148.7 228 38.2
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 1.9e-33 148.3 173 48.0
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.4e-33 147.9 233 54.1
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 2.4e-33 147.9 226 55.3
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 3.2e-33 147.5 229 54.6
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 3.2e-33 147.5 238 37.0
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 3.2e-33 147.5 229 54.1
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 4.1e-33 147.1 228 55.3
Sopen03g036300 Solanum pennellii HOM05D003361 ORTHO05D003760 4.1e-33 147.1 229 53.7
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 5.4e-33 146.7 173 43.9
RcHm_v2.0_Chr2g0087081 Rosa chinensis HOM05D003361 ORTHO05D003760 5.4e-33 146.7 230 53.0
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 7.1e-33 146.4 233 54.1
Lalb_Chr12g0198401 Lupinus albus HOM05D003361 ORTHO05D003760 9.2e-33 146.0 231 44.6
TAR383G0111 Trochodendron aralioides HOM05D003361 ORTHO05D003760 9.2e-33 146.0 233 52.8
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.2e-32 145.6 231 54.1
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.2e-32 145.6 231 54.1
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 1.6e-32 145.2 231 54.1
TPR.G7990 Trifolium pratense HOM05D003361 ORTHO05D003760 1.6e-32 145.2 228 45.6
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 2.1e-32 144.8 228 53.9
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.1e-32 144.8 249 51.0
arahy.Tifrunner.gnm1.ann1.MWAB5B Arachis hypogaea HOM05D003361 ORTHO05D003760 2.7e-32 144.4 245 51.8
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 2.7e-32 144.4 173 47.4
FvH4_1g02020 Fragaria vesca HOM05D003361 ORTHO05D003760 2.7e-32 144.4 227 52.9
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 2.7e-32 144.4 233 55.4
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 2.7e-32 144.4 233 55.4
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 2.7e-32 144.4 178 46.1
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 2.7e-32 144.4 229 53.3
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 3.5e-32 144.1 228 53.1
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 3.5e-32 144.1 229 55.0
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 3.5e-32 144.1 227 54.6
CDE05G0968 Ceratophyllum demersum HOM05D003361 ORTHO05D003760 4.6e-32 143.7 174 44.8
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 4.6e-32 143.7 234 53.8
MD02G1018400 Malus domestica HOM05D003361 ORTHO05D003760 4.6e-32 143.7 231 52.4
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 6.0e-32 143.3 231 44.6
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 6.0e-32 143.3 228 53.9
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 7.8e-32 142.9 226 53.5
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 1.0e-31 142.5 233 54.1
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 1.3e-31 142.1 238 52.1
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 1.3e-31 142.1 233 36.5
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 1.3e-31 142.1 235 53.6
Zm00001eb247040 Zea mays HOM05D003361 ORTHO05D003760 1.3e-31 142.1 247 49.0
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 2.3e-31 141.4 231 36.8
Dinv41445 Davidia involucrata HOM05D003361 ORTHO05D003760 2.3e-31 141.4 178 45.5
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 2.3e-31 141.4 234 52.6
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 3.0e-31 141.0 227 52.0
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 3.9e-31 140.6 233 54.9
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 5.1e-31 140.2 228 51.8
Glyma.17G107400 Glycine max HOM05D003361 ORTHO05D003760 5.1e-31 140.2 174 42.5
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 5.1e-31 140.2 233 53.6
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 5.1e-31 140.2 233 53.6
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 5.1e-31 140.2 233 52.4
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 6.6e-31 139.8 233 54.9
Hma1.2p1_0461F.1_g157700 Hydrangea macrophylla HOM05D003361 ORTHO05D003760 8.6e-31 139.4 173 44.5
arahy.Tifrunner.gnm1.ann1.H7Z4S8 Arachis hypogaea HOM05D003361 ORTHO05D003760 1.1e-30 139.0 233 51.1
arahy.Tifrunner.gnm1.ann1.T3C7Q8 Arachis hypogaea HOM05D003361 ORTHO05D003760 1.1e-30 139.0 233 43.3
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 1.1e-30 139.0 178 43.8
HPP92_017331 Vanilla planifolia HOM05D003361 ORTHO05D003760 1.1e-30 139.0 175 44.0
Sed0010441 Sechium edule HOM05D003361 ORTHO05D003760 1.5e-30 138.7 250 48.0
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 1.5e-30 138.7 228 50.0
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 1.9e-30 138.3 227 52.9
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 1.9e-30 138.3 173 43.4
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 1.9e-30 138.3 229 53.3
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 3.3e-30 137.5 226 54.0
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 3.3e-30 137.5 229 53.7
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 4.3e-30 137.1 231 53.7
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 4.3e-30 137.1 173 44.5
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 4.3e-30 137.1 230 53.5
FAN28G0525 Fragaria x ananassa HOM05D003361 ORTHO05D003760 4.3e-30 137.1 227 52.0
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 4.3e-30 137.1 174 42.0
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 5.6e-30 136.7 227 52.0
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 5.6e-30 136.7 226 52.7
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 5.6e-30 136.7 235 51.9
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 5.6e-30 136.7 231 52.8
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 7.3e-30 136.3 226 51.8
Psat7g257800 Pisum sativum HOM05D003361 ORTHO05D003760 7.3e-30 136.3 232 53.4
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 9.6e-30 136.0 227 52.4
Dinv36449 Davidia involucrata HOM05D003361 ORTHO05D003760 9.6e-30 136.0 178 43.8
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 9.6e-30 136.0 228 53.1
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 9.6e-30 136.0 178 43.3
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 9.6e-30 136.0 227 52.0
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 1.6e-29 135.2 229 52.0
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 1.6e-29 135.2 227 52.4
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 1.6e-29 135.2 227 52.4
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 1.6e-29 135.2 227 52.0
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 1.6e-29 135.2 173 45.1
Psat0s571g0080 Pisum sativum HOM05D003361 ORTHO05D003760 1.6e-29 135.2 228 51.8
Ah.09g224100 Amaranthus hybridus HOM05D003361 ORTHO05D003760 2.8e-29 134.4 228 53.5
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 2.8e-29 134.4 227 52.0
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 2.8e-29 134.4 232 51.7
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 2.8e-29 134.4 231 53.2
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 3.6e-29 134.0 235 52.3
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 4.7e-29 133.7 229 51.5
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 6.2e-29 133.3 222 51.4
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 6.2e-29 133.3 228 52.2
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 6.2e-29 133.3 233 50.6
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 8.1e-29 132.9 231 50.6
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 1.1e-28 132.5 234 52.6
Os04g0503500 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 1.1e-28 132.5 177 42.4
Os02g0613200 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 1.4e-28 132.1 233 52.4
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 1.4e-28 132.1 231 50.6
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 1.8e-28 131.7 231 52.4
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 1.8e-28 131.7 177 41.2
Cc06_g07660 Coffea canephora HOM05D003361 ORTHO05D003760 2.4e-28 131.3 245 32.7
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 2.4e-28 131.3 173 42.2
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 2.4e-28 131.3 177 42.9
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 2.4e-28 131.3 173 40.5
Prupe.7G252400 Prunus persica HOM05D003361 ORTHO05D003760 2.4e-28 131.3 174 41.4
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 2.4e-28 131.3 173 42.8
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 3.1e-28 131.0 234 53.0
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 8.9e-28 129.4 231 53.2
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 1.2e-27 129.0 177 40.1
Phvul.003G172400 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 1.5e-27 128.6 175 42.3
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 2.0e-27 128.3 229 50.7
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 3.4e-27 127.5 233 52.4
MD17G1217000 Malus domestica HOM05D003361 ORTHO05D003760 4.4e-27 127.1 164 63.4
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 5.8e-27 126.7 230 51.7
Glyma.13G367200 Glycine max HOM05D003361 ORTHO05D003760 7.6e-27 126.3 202 55.4
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 7.6e-27 126.3 174 41.4
Dinv30637 Davidia involucrata HOM05D003361 ORTHO05D003760 9.9e-27 125.9 173 40.5
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 9.9e-27 125.9 178 39.9
Medtr4g009873 Medicago truncatula HOM05D003361 ORTHO05D003760 1.3e-26 125.6 175 42.3
Zm00001eb078100 Zea mays HOM05D003361 ORTHO05D003760 1.3e-26 125.6 177 40.1
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 2.2e-26 124.8 174 40.2
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 2.9e-26 124.4 230 51.7
VMungo0331G0010 Vigna mungo HOM05D003361 ORTHO05D003760 4.9e-26 123.6 233 51.1
SHI02098 Sapria himalayana HOM05D003361 ORTHO05D003760 6.4e-26 123.2 178 42.7
Duzib187G1093 Durio zibethinus HOM05D003361 ORTHO05D003760 1.4e-25 122.1 164 57.9
Psat1g109200 Pisum sativum HOM05D003361 ORTHO05D003760 1.4e-25 122.1 228 33.8
PSO170G6803 Papaver somniferum HOM05D003361 ORTHO05D003760 7.1e-25 119.8 177 37.9
PGSC0003DMG400007912 Solanum tuberosum HOM05D003361 ORTHO05D003760 7.1e-25 119.8 245 44.1
Solyc07g007420.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 1.2e-24 119.0 178 39.3
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 1.2e-24 119.0 178 39.3
Solyc12g009870.2 Solanum lycopersicum HOM05D003361 ORTHO05D003760 3.5e-24 117.5 245 42.9
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 4.6e-24 117.1 178 39.3
PSO017G3211 Papaver somniferum HOM05D003361 ORTHO05D003760 2.3e-23 114.8 177 37.3
PGSC0003DMG400030688 Solanum tuberosum HOM05D003361 ORTHO05D003760 8.7e-23 112.8 178 38.8
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.1e-22 112.5 116 44.8
Peaxi162Scf00088g00618 Petunia axillaris HOM05D003361 ORTHO05D003760 1.9e-22 111.7 176 39.8
Nitab4.5_0002286g0090 Nicotiana tabacum HOM05D003361 ORTHO05D003760 4.3e-22 110.5 178 36.5
Peaxi162Scf01694g00019 Petunia axillaris HOM05D003361 ORTHO05D003760 9.6e-22 109.4 174 37.9
Lj3g0027196 Lotus japonicus HOM05D003361 ORTHO05D003760 1.4e-20 105.5 180 52.2
HanXRQChr09g0274781 Helianthus annuus HOM05D003361 ORTHO05D003760 5.8e-19 100.1 177 35.0
Nitab4.5_0009284g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 5.8e-19 100.1 176 54.5
Duzib150G0304 Durio zibethinus HOM05D003361 ORTHO05D003760 1.3e-18 99.0 148 56.1
arahy.Tifrunner.gnm1.ann1.TB3UR8 Arachis hypogaea HOM05D003361 ORTHO05D003760 1.7e-18 98.6 193 31.6
arahy.Tifrunner.gnm1.ann1.YII6YD Arachis hypogaea HOM05D003361 ORTHO05D003760 1.7e-18 98.6 193 31.6
Nitab4.5_0002329g0140 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.7e-18 98.6 173 34.1
Nitab4.5_0008536g0030 Nicotiana tabacum HOM05D003361 ORTHO05D003760 3.5e-16 90.9 174 36.2
unitig_699.g19089 Utricularia gibba HOM05D003361 ORTHO05D003760 3.0e-15 87.8 198 34.3
Oeu027837.1 Olea europaea HOM05D003361 ORTHO05D003760 6.9e-12 76.6 117 70.9
Psat0s520g0120 Pisum sativum HOM05D003361 ORTHO05D003760 5.4e-09 67.0 113 43.4
MCO10G095 Micromonas commoda HOM05D003361 ORTHO05D003760 8.7e-07 59.7 168 47.6
CAN.G509.10 Capsicum annuum HOM05D003361 ORTHO05D003760 5.6e-06 57.0 49 57.1


User provided reference genes

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