Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.5e-242 841.6 415 100.0
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.6e-199 698.7 399 84.7
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.4e-136 490.3 411 57.9
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 2.9e-129 466.1 402 56.0
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.9e-128 463.4 406 54.2
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 9.2e-128 461.1 399 55.4
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 7.8e-127 458.0 402 54.7
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.3e-126 457.2 412 53.9
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 8.6e-126 454.5 402 54.7
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.9e-125 453.4 416 52.6
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 3.3e-125 452.6 399 53.9
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 5.6e-125 451.8 402 53.2
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 1.2e-124 450.7 399 53.9
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.6e-124 450.3 401 54.9
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 2.1e-124 449.9 402 53.0
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.8e-124 449.5 411 52.8
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 3.6e-124 449.1 402 52.7
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 4.7e-124 448.7 399 53.6
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 4.7e-124 448.7 402 54.0
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 6.2e-124 448.4 404 53.5
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.1e-123 447.6 416 51.7
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.4e-123 447.2 408 52.9
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.4e-123 447.2 406 53.7
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.4e-123 447.2 402 53.7
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.3e-123 446.4 415 53.3
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 3.1e-123 446.0 411 53.0
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 4.0e-123 445.7 416 51.0
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 4.0e-123 445.7 411 53.0
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 8.9e-123 444.5 404 53.0
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.2e-122 444.1 406 53.0
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 1.5e-122 443.7 402 52.5
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.0e-122 443.4 406 52.2
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.0e-122 443.4 406 52.2
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 4.4e-122 442.2 399 53.4
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 5.8e-122 441.8 406 51.7
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 5.8e-122 441.8 402 52.2
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.8e-122 441.8 411 51.1
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.8e-122 441.8 412 51.5
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 5.8e-122 441.8 409 51.6
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.5e-122 441.4 411 51.8
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 9.8e-122 441.0 403 53.1
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 9.8e-122 441.0 402 52.2
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 9.8e-122 441.0 398 53.3
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 9.8e-122 441.0 398 53.8
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 1.3e-121 440.7 417 50.1
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 1.3e-121 440.7 402 53.7
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 1.7e-121 440.3 406 53.2
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.2e-121 439.9 402 52.0
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.9e-121 439.5 399 51.9
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 3.7e-121 439.1 414 51.2
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 3.7e-121 439.1 406 51.5
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.7e-121 439.1 402 53.2
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 4.9e-121 438.7 415 52.0
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 4.9e-121 438.7 399 52.9
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 4.9e-121 438.7 402 52.5
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 8.3e-121 438.0 402 52.2
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 8.3e-121 438.0 406 52.2
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.1e-120 437.6 406 52.0
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 1.1e-120 437.6 402 53.7
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 1.1e-120 437.6 402 52.7
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 1.4e-120 437.2 403 52.9
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.4e-120 437.2 405 52.8
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.2e-120 436.0 411 51.1
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.2e-120 436.0 399 51.6
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 3.2e-120 436.0 406 51.5
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 4.1e-120 435.6 413 51.3
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 9.2e-120 434.5 412 50.5
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 1.2e-119 434.1 404 52.5
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.6e-119 433.7 402 51.5
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.6e-119 433.7 402 52.5
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.6e-119 433.7 399 51.4
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.7e-119 433.0 402 53.0
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 3.5e-119 432.6 399 52.9
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.5e-119 432.6 402 51.7
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 4.6e-119 432.2 406 50.7
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 6.0e-119 431.8 405 51.4
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 7.8e-119 431.4 401 51.6
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 7.8e-119 431.4 399 52.6
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.0e-118 431.0 406 52.0
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.3e-118 430.6 415 50.8
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.7e-118 430.3 402 52.5
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.3e-118 429.9 404 50.7
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 2.3e-118 429.9 441 48.5
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 3.9e-118 429.1 411 50.4
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 3.9e-118 429.1 397 52.9
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.1e-118 428.7 421 50.4
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 6.6e-118 428.3 402 52.2
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.6e-118 427.9 404 51.7
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.5e-117 427.2 423 50.8
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.5e-117 427.2 435 49.9
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.9e-117 426.8 428 49.8
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 3.3e-117 426.0 411 50.1
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 4.3e-117 425.6 405 50.9
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 4.3e-117 425.6 402 51.7
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 5.6e-117 425.2 411 49.6
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 9.5e-117 424.5 402 50.5
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.2e-116 424.1 421 50.4
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 2.1e-116 423.3 400 51.2
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.7e-116 422.2 418 51.2
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 8.1e-116 421.4 407 48.9
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 3.1e-115 419.5 409 51.1
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.2e-114 417.5 411 50.6
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.2e-114 417.5 411 50.6
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.2e-114 417.5 411 50.6
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.5e-114 417.2 411 49.9
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 1.5e-114 417.2 399 50.6
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.5e-114 417.2 411 49.1
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 2.0e-114 416.8 411 50.1
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 2.0e-114 416.8 411 51.1
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 5.8e-114 415.2 401 50.9
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 7.6e-114 414.8 411 49.9
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 9.9e-114 414.5 415 50.6
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 9.9e-114 414.5 402 48.5
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 1.3e-113 414.1 411 49.9
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.3e-113 414.1 399 50.4
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.7e-113 413.7 399 50.1
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 3.8e-113 412.5 399 49.4
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 4.9e-113 412.1 406 48.0
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 6.4e-113 411.8 411 49.6
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.1e-112 411.0 411 49.9
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 3.2e-112 409.5 395 49.6
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.4e-112 408.7 380 51.1
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.4e-112 408.7 380 51.1
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 9.2e-112 407.9 402 50.7
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 3.5e-111 406.0 402 49.8
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 3.9e-110 402.5 435 47.1
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 4.3e-109 399.1 368 53.3
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 5.6e-109 398.7 408 49.0
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 7.3e-109 398.3 402 49.3
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 9.6e-109 397.9 405 48.9
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.2e-108 397.5 383 50.9
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.6e-108 397.1 494 42.7
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.6e-108 396.0 386 51.3
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 6.9e-107 391.7 369 52.0
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 4.4e-106 389.0 402 48.5
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 2.4e-104 383.3 458 43.7
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.2e-104 382.9 414 48.6
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 1.2e-103 380.9 403 48.9
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.9e-101 373.6 560 37.3
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 1.1e-96 357.8 433 43.2
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 2.0e-90 337.0 419 43.9
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.3e-89 334.3 367 46.3
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 2.4e-83 313.5 302 51.3
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.4e-75 287.7 268 52.6
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.3e-59 232.6 224 50.0
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.7e-57 227.6 298 39.3
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.1e-51 208.4 180 53.3
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.7e-47 193.7 186 51.6
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 3.6e-47 193.4 151 58.9
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 1.5e-37 161.4 208 42.8
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 1.0e-30 138.7 123 51.2
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 1.6e-26 124.8 393 26.0
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 3.6e-23 113.6 94 59.6
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 8.0e-23 112.5 143 40.6
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 2.3e-22 110.9 107 49.5
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 2.0e-21 107.8 96 51.0
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 7.5e-21 105.9 100 55.0
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 1.1e-16 92.0 94 51.1
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 5.8e-13 79.7 110 37.3
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.8e-13 79.7 73 47.9
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 7.5e-13 79.3 109 36.7
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 1.7e-12 78.2 63 47.6
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.2e-12 77.8 85 42.4
Pp3c20_7250 Physcomitrium patens HOM05D003877 ORTHO05D004647 3.2e-11 73.9 114 38.6
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 6.0e-10 69.7 70 45.7
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 1.0e-09 68.9 76 48.7
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.3e-08 63.5 44 61.4


User provided reference genes

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