Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 1.3e-77 293.1 160 100.0
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 3.3e-25 119.0 166 51.2
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 4.9e-21 105.1 100 65.0
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 2.5e-20 102.8 160 45.0
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 2.1e-19 99.8 123 50.4
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 3.5e-19 99.0 145 44.1
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 1.0e-18 97.4 121 50.4
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 1.3e-18 97.1 105 53.3
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 2.3e-18 96.3 118 50.0
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 2.3e-18 96.3 134 49.3
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 3.0e-18 95.9 121 49.6
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 3.0e-18 95.9 112 52.7
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 3.9e-18 95.5 111 53.2
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 5.1e-18 95.1 97 52.6
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 1.1e-17 94.0 142 45.8
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 1.1e-17 94.0 153 43.8
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 1.1e-17 94.0 126 46.0
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 1.1e-17 94.0 136 46.3
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 2.5e-17 92.8 119 47.9
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 3.3e-17 92.4 142 43.0
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 3.3e-17 92.4 132 46.2
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 3.3e-17 92.4 139 44.6
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 5.6e-17 91.7 145 42.8
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 5.6e-17 91.7 145 42.8
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 5.6e-17 91.7 145 42.8
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 5.6e-17 91.7 145 42.8
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 5.6e-17 91.7 131 44.3
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 5.6e-17 91.7 132 46.2
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 7.4e-17 91.3 140 44.3
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 7.4e-17 91.3 149 43.0
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 7.4e-17 91.3 123 48.8
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 7.4e-17 91.3 116 49.1
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 7.4e-17 91.3 118 49.2
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 9.6e-17 90.9 137 48.9
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 9.6e-17 90.9 119 46.2
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 1.3e-16 90.5 142 45.1
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 1.3e-16 90.5 139 47.5
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.6e-16 90.1 145 43.4
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 2.1e-16 89.7 98 52.0
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 2.1e-16 89.7 144 41.0
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 2.1e-16 89.7 140 45.0
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 2.1e-16 89.7 143 41.3
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 2.8e-16 89.4 122 48.4
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 2.8e-16 89.4 117 51.3
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 2.8e-16 89.4 129 44.2
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 2.8e-16 89.4 87 52.9
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 2.8e-16 89.4 54 81.5
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 2.8e-16 89.4 143 47.6
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 3.7e-16 89.0 73 58.9
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 3.7e-16 89.0 113 49.6
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 3.7e-16 89.0 143 42.7
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 3.7e-16 89.0 132 48.5
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 4.8e-16 88.6 134 49.3
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 4.8e-16 88.6 111 48.6
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 4.8e-16 88.6 116 45.7
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 4.8e-16 88.6 129 46.5
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 6.2e-16 88.2 137 42.3
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 6.2e-16 88.2 141 45.4
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 6.2e-16 88.2 83 63.9
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 6.2e-16 88.2 155 40.6
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 8.2e-16 87.8 130 48.5
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 8.2e-16 87.8 121 46.3
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 8.2e-16 87.8 100 50.0
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 8.2e-16 87.8 101 54.5
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 1.1e-15 87.4 136 42.6
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 1.1e-15 87.4 51 86.3
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 1.1e-15 87.4 140 42.9
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 1.1e-15 87.4 100 50.0
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 1.4e-15 87.0 73 63.0
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 1.4e-15 87.0 145 41.4
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 1.4e-15 87.0 145 41.4
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 1.4e-15 87.0 68 61.8
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.4e-15 87.0 89 53.9
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 1.4e-15 87.0 147 41.5
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 1.8e-15 86.7 152 42.1
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 1.8e-15 86.7 142 42.3
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 1.8e-15 86.7 99 47.5
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 1.8e-15 86.7 87 54.0
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 2.4e-15 86.3 146 43.8
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 2.4e-15 86.3 134 42.5
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 2.4e-15 86.3 125 45.6
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 2.4e-15 86.3 141 42.6
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 2.4e-15 86.3 94 55.3
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 2.4e-15 86.3 94 51.1
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 3.1e-15 85.9 132 42.4
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 3.1e-15 85.9 108 51.9
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 3.1e-15 85.9 114 47.4
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 4.0e-15 85.5 142 44.4
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 4.0e-15 85.5 139 43.9
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 4.0e-15 85.5 95 54.7
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 5.3e-15 85.1 134 41.0
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 5.3e-15 85.1 134 41.0
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 5.3e-15 85.1 134 41.0
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 5.3e-15 85.1 149 42.3
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 5.3e-15 85.1 148 41.2
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 5.3e-15 85.1 87 56.3
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 5.3e-15 85.1 94 47.9
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 6.9e-15 84.7 141 43.3
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 6.9e-15 84.7 141 43.3
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 6.9e-15 84.7 151 43.7
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 9.0e-15 84.3 143 43.4
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 9.0e-15 84.3 148 39.2
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.2e-14 84.0 97 51.5
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 1.2e-14 84.0 88 58.0
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 1.2e-14 84.0 90 54.4
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 1.2e-14 84.0 123 44.7
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 1.5e-14 83.6 142 43.0
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 1.5e-14 83.6 116 45.7
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 2.0e-14 83.2 104 48.1
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 2.0e-14 83.2 80 57.5
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 2.0e-14 83.2 164 40.9
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 2.6e-14 82.8 92 51.1
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 3.4e-14 82.4 125 42.4
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 3.4e-14 82.4 82 56.1
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 3.4e-14 82.4 122 45.9
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 4.5e-14 82.0 144 41.7
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 4.5e-14 82.0 147 38.1
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 4.5e-14 82.0 132 42.4
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 4.5e-14 82.0 151 39.7
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 5.8e-14 81.6 131 43.5
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 5.8e-14 81.6 153 45.1
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 7.6e-14 81.3 131 39.7
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 7.6e-14 81.3 149 39.6
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 1.3e-13 80.5 155 40.6
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 1.3e-13 80.5 126 42.9
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 1.3e-13 80.5 59 66.1
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 2.9e-13 79.3 153 39.2
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 3.8e-13 79.0 101 50.5
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 3.8e-13 79.0 148 37.8
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 4.9e-13 78.6 95 48.4
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 6.5e-13 78.2 140 44.3
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 1.1e-12 77.4 81 53.1
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 1.9e-12 76.6 111 44.1
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 4.2e-12 75.5 167 40.7
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 7.1e-12 74.7 100 46.0
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 9.3e-12 74.3 166 37.3
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 1.2e-11 73.9 132 40.2
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 1.6e-11 73.6 107 43.9
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 3.5e-11 72.4 103 45.6
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 3.5e-11 72.4 142 36.6
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 4.6e-11 72.0 106 39.6
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 6.1e-11 71.6 171 37.4
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 7.9e-11 71.2 82 57.3
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 7.9e-11 71.2 117 44.4
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 7.9e-11 71.2 41 82.9
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 1.0e-10 70.9 50 68.0
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 5.1e-10 68.6 117 39.3
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 6.7e-10 68.2 90 48.9
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 1.1e-09 67.4 104 45.2
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 1.1e-09 67.4 110 45.5
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 2.5e-09 66.2 110 43.6
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 4.3e-09 65.5 59 52.5
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 4.3e-09 65.5 146 37.7
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 7.4e-09 64.7 139 37.4
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 9.7e-09 64.3 107 43.0
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 3.7e-08 62.4 185 34.1
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 6.3e-08 61.6 111 43.2
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 1.1e-07 60.8 94 40.4
MCO14G251 Micromonas commoda HOM05D005376 ORTHO05D006481 4.1e-07 58.9 102 41.2
Pp3c16_8830 Physcomitrium patens HOM05D005376 ORTHO05D006481 3.4e-06 55.8 110 37.3
BraA02t08810Z Brassica rapa HOM05D004404 ORTHO05D005070 4.5e-06 55.5 80 50.0
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 5.9e-06 55.1 108 34.3
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 7.7e-06 54.7 78 41.0
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 7.7e-06 54.7 93 34.4
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 1.0e-05 54.3 136 33.1
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 1.0e-05 54.3 136 33.1


User provided reference genes

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