Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 0.0e+00 1196.8 601 100.0
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 7.6e-99 365.5 472 42.6
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 2.2e-98 364.0 551 41.7
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 2.0e-91 340.9 465 44.3
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 1.3e-90 338.2 530 38.9
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 2.9e-90 337.0 527 38.9
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 2.9e-90 337.0 455 42.2
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 2.9e-90 337.0 456 41.9
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 3.8e-90 336.7 472 41.1
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 6.5e-90 335.9 496 39.5
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 8.4e-90 335.5 496 39.3
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 1.4e-89 334.7 454 42.3
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 4.2e-89 333.2 517 39.7
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 1.2e-88 331.6 542 37.6
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 2.7e-88 330.5 471 41.2
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 6.0e-88 329.3 468 40.4
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 7.9e-88 328.9 466 42.1
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 1.0e-87 328.6 477 41.3
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 2.3e-87 327.4 476 41.6
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 3.9e-87 326.6 541 37.7
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 3.9e-87 326.6 463 41.0
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 5.1e-87 326.2 460 41.1
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 5.1e-87 326.2 468 40.8
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 6.7e-87 325.9 462 40.5
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 6.7e-87 325.9 472 41.3
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 1.5e-86 324.7 523 39.4
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 2.5e-86 323.9 517 38.3
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 2.5e-86 323.9 454 41.6
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 3.3e-86 323.6 569 37.6
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 4.3e-86 323.2 464 39.9
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 4.3e-86 323.2 469 40.9
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 7.4e-86 322.4 577 37.8
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 7.4e-86 322.4 497 39.8
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 1.6e-85 321.2 475 39.4
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 1.6e-85 321.2 484 39.0
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 3.7e-85 320.1 453 40.2
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 4.8e-85 319.7 496 38.5
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 1.4e-84 318.2 469 40.9
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 1.4e-84 318.2 460 40.7
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 1.4e-84 318.2 454 41.4
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 4.1e-84 316.6 474 41.4
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 4.1e-84 316.6 481 39.5
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 5.3e-84 316.2 515 37.9
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 6.9e-84 315.8 480 40.0
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 6.9e-84 315.8 465 41.3
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 6.9e-84 315.8 461 41.2
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 1.2e-83 315.1 495 38.4
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 1.5e-83 314.7 488 40.2
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 2.6e-83 313.9 476 41.4
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 2.6e-83 313.9 465 38.7
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 3.4e-83 313.5 474 38.8
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 1.0e-82 312.0 489 40.3
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 1.3e-82 311.6 508 39.4
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 1.7e-82 311.2 490 40.8
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 1.7e-82 311.2 508 37.8
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 2.9e-82 310.5 499 38.1
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 3.8e-82 310.1 534 38.2
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 6.5e-82 309.3 467 39.8
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 6.5e-82 309.3 479 39.0
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 8.5e-82 308.9 440 41.6
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 1.4e-81 308.1 457 40.5
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 1.9e-81 307.8 457 40.3
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 2.5e-81 307.4 536 38.2
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 2.5e-81 307.4 483 41.4
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 3.2e-81 307.0 479 38.8
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 4.2e-81 306.6 497 38.4
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 5.5e-81 306.2 453 40.0
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 5.5e-81 306.2 454 40.5
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.2e-80 305.1 461 40.3
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.6e-80 304.7 461 40.1
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 2.1e-80 304.3 457 41.4
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 2.1e-80 304.3 461 39.9
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 6.1e-80 302.8 462 37.9
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 6.1e-80 302.8 504 37.9
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 7.9e-80 302.4 473 40.0
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.9e-79 300.1 463 39.3
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 6.7e-79 299.3 455 40.7
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 2.5e-78 297.4 532 37.4
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 7.4e-78 295.8 469 39.2
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 9.7e-78 295.4 490 37.8
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 1.7e-77 294.7 472 38.6
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 2.2e-77 294.3 467 38.8
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 6.3e-77 292.7 478 38.7
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 1.1e-76 292.0 551 37.6
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 1.4e-76 291.6 497 37.6
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 1.8e-76 291.2 500 37.0
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 4.1e-76 290.0 462 39.0
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 6.9e-76 289.3 524 37.6
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 2.6e-75 287.3 528 36.0
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 4.5e-75 286.6 538 37.2
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 4.5e-75 286.6 538 37.4
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 4.5e-75 286.6 478 36.6
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 7.7e-75 285.8 487 38.0
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.0e-74 283.1 399 42.9
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 4.7e-72 276.6 563 35.0
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 1.8e-71 274.6 420 39.8
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 2.2e-69 267.7 413 38.0
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 1.5e-67 261.5 441 38.8
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 7.7e-67 259.2 455 36.9
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 5.0e-58 229.9 375 38.9
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 6.5e-58 229.6 460 33.0
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 5.5e-49 199.9 321 40.5
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 1.9e-41 174.9 695 26.9
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 3.3e-41 174.1 560 25.9
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 5.2e-39 166.8 525 28.4
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 9.5e-33 146.0 505 28.9
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 2.3e-31 141.4 380 32.1
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 2.8e-24 117.9 243 33.7
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.0e-18 99.4 120 45.0
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 1.9e-17 95.1 111 46.8
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 3.2e-12 77.8 125 36.8
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 5.6e-09 67.0 80 42.5
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 1.8e-07 62.0 70 47.1
AagrBONN_evm.TU.Sc2ySwM_228.1947 Anthoceros agrestis HOM05D004977 ORTHO05D006454 3.1e-07 61.2 281 24.2
Potri.001G213900 Populus trichocarpa HOM05D004977 ORTHO05D006454 4.0e-07 60.8 286 22.0
Sc11g0002670 Simmondsia chinensis HOM05D004977 ORTHO05D006454 2.0e-06 58.5 121 30.6
EL10Ac3g07492 Beta vulgaris HOM05D004618 ORTHO05D005318 5.8e-06 57.0 107 33.6
HanXRQChr16g0525891 Helianthus annuus HOM05D004977 ORTHO05D006454 5.8e-06 57.0 315 21.0


User provided reference genes

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